miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24683 3' -50 NC_005264.1 + 149731 0.66 0.996702
Target:  5'- uUGCUguaguGGCGCcgGCG-GGCAGAGGCGa -3'
miRNA:   3'- cACGG-----CCGCGaaCGUuUUGUCUUUGU- -5'
24683 3' -50 NC_005264.1 + 125307 0.66 0.996702
Target:  5'- -cGCCuGaCGCUUGCAAGACGcc-GCAg -3'
miRNA:   3'- caCGGcC-GCGAACGUUUUGUcuuUGU- -5'
24683 3' -50 NC_005264.1 + 66618 0.66 0.996702
Target:  5'- uUGCCGGCGCcgucGCG--GCccGAGGCAa -3'
miRNA:   3'- cACGGCCGCGaa--CGUuuUGu-CUUUGU- -5'
24683 3' -50 NC_005264.1 + 18141 0.66 0.996702
Target:  5'- cUGuCUGGCGCgaGCGGcuaAGAGACAg -3'
miRNA:   3'- cAC-GGCCGCGaaCGUUuugUCUUUGU- -5'
24683 3' -50 NC_005264.1 + 24954 0.66 0.996646
Target:  5'- uGUGCCguaccagGGCGCU-GCGccGAAuCGGAAACu -3'
miRNA:   3'- -CACGG-------CCGCGAaCGU--UUU-GUCUUUGu -5'
24683 3' -50 NC_005264.1 + 109804 0.66 0.996532
Target:  5'- -gGCCGGggccauuuccaugaCGUgcgUGCAGGuuGCGGAGGCAg -3'
miRNA:   3'- caCGGCC--------------GCGa--ACGUUU--UGUCUUUGU- -5'
24683 3' -50 NC_005264.1 + 116657 0.66 0.996109
Target:  5'- -cGCCGGCGUgcucgGCGAucAGCcuAGACAc -3'
miRNA:   3'- caCGGCCGCGaa---CGUU--UUGucUUUGU- -5'
24683 3' -50 NC_005264.1 + 82316 0.66 0.996109
Target:  5'- -cGCCGGCGC-UGCAAuuCAu----- -3'
miRNA:   3'- caCGGCCGCGaACGUUuuGUcuuugu -5'
24683 3' -50 NC_005264.1 + 87750 0.66 0.996109
Target:  5'- -cGCCGGCGCcUGCc--GCAGcgccGCGa -3'
miRNA:   3'- caCGGCCGCGaACGuuuUGUCuu--UGU- -5'
24683 3' -50 NC_005264.1 + 69273 0.66 0.996109
Target:  5'- cUGCCauggGGCGC--GCGAAACAaGGAGCu -3'
miRNA:   3'- cACGG----CCGCGaaCGUUUUGU-CUUUGu -5'
24683 3' -50 NC_005264.1 + 155264 0.66 0.996109
Target:  5'- -cGCagCGGCGCgggGUAGgcGGCGGGGACGa -3'
miRNA:   3'- caCG--GCCGCGaa-CGUU--UUGUCUUUGU- -5'
24683 3' -50 NC_005264.1 + 90083 0.66 0.996109
Target:  5'- -cGCuaCGGCGCacGCGucACGGAAGCu -3'
miRNA:   3'- caCG--GCCGCGaaCGUuuUGUCUUUGu -5'
24683 3' -50 NC_005264.1 + 79993 0.66 0.996109
Target:  5'- aUGCCGGcCGC--GCGGAAgaGGAGGCGc -3'
miRNA:   3'- cACGGCC-GCGaaCGUUUUg-UCUUUGU- -5'
24683 3' -50 NC_005264.1 + 93402 0.66 0.995431
Target:  5'- -gGCCGGCGCg-GCuauAAGgaAGggGCAa -3'
miRNA:   3'- caCGGCCGCGaaCGu--UUUg-UCuuUGU- -5'
24683 3' -50 NC_005264.1 + 5961 0.66 0.995431
Target:  5'- -gGCagCGGCGCaUUcGCGGAugGGAGACu -3'
miRNA:   3'- caCG--GCCGCG-AA-CGUUUugUCUUUGu -5'
24683 3' -50 NC_005264.1 + 127015 0.66 0.995431
Target:  5'- cGUGCaCGGgcCGCcaUUGCGGggccGGCAGAGGCGc -3'
miRNA:   3'- -CACG-GCC--GCG--AACGUU----UUGUCUUUGU- -5'
24683 3' -50 NC_005264.1 + 7988 0.66 0.995431
Target:  5'- cGUGCaCGGgcCGCcaUUGCGGggccGGCAGAGGCGc -3'
miRNA:   3'- -CACG-GCC--GCG--AACGUU----UUGUCUUUGU- -5'
24683 3' -50 NC_005264.1 + 145975 0.66 0.99466
Target:  5'- -cGCCGGCGCgaauacgaacUGCGcgGCGGcuGGCGg -3'
miRNA:   3'- caCGGCCGCGa---------ACGUuuUGUCu-UUGU- -5'
24683 3' -50 NC_005264.1 + 30075 0.66 0.99466
Target:  5'- -cGUCGGCGCcgccGCGcccGGACAGAAucGCGa -3'
miRNA:   3'- caCGGCCGCGaa--CGU---UUUGUCUU--UGU- -5'
24683 3' -50 NC_005264.1 + 135137 0.66 0.993787
Target:  5'- uGUGCgcauugagagCGaGCGUcgGCGAGGCAGAGGCc -3'
miRNA:   3'- -CACG----------GC-CGCGaaCGUUUUGUCUUUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.