Results 1 - 20 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24683 | 3' | -50 | NC_005264.1 | + | 114994 | 1.1 | 0.008895 |
Target: 5'- cGUGCCGGCGCUUGCAAAACAGAAACAu -3' miRNA: 3'- -CACGGCCGCGAACGUUUUGUCUUUGU- -5' |
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24683 | 3' | -50 | NC_005264.1 | + | 120738 | 0.79 | 0.571368 |
Target: 5'- gGUGCCGGCGacUGCGAcGACAGGGAUAu -3' miRNA: 3'- -CACGGCCGCgaACGUU-UUGUCUUUGU- -5' |
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24683 | 3' | -50 | NC_005264.1 | + | 73468 | 0.78 | 0.614322 |
Target: 5'- -aGCCGGCGCUUGCcgu-CAGGAAg- -3' miRNA: 3'- caCGGCCGCGAACGuuuuGUCUUUgu -5' |
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24683 | 3' | -50 | NC_005264.1 | + | 130844 | 0.75 | 0.752331 |
Target: 5'- -aGCuCGGCGCauaacggaGCGAAGCAGGAGCGg -3' miRNA: 3'- caCG-GCCGCGaa------CGUUUUGUCUUUGU- -5' |
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24683 | 3' | -50 | NC_005264.1 | + | 150865 | 0.74 | 0.82886 |
Target: 5'- cGUGCCGcGCGCg-GCAAGACAuGGGCGc -3' miRNA: 3'- -CACGGC-CGCGaaCGUUUUGUcUUUGU- -5' |
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24683 | 3' | -50 | NC_005264.1 | + | 31839 | 0.74 | 0.82886 |
Target: 5'- cGUGCCGcGCGCg-GCAAGACAuGGGCGc -3' miRNA: 3'- -CACGGC-CGCGaaCGUUUUGUcUUUGU- -5' |
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24683 | 3' | -50 | NC_005264.1 | + | 29781 | 0.73 | 0.870552 |
Target: 5'- cUGUCGGC-UUUGCGAGcCAGAAACAc -3' miRNA: 3'- cACGGCCGcGAACGUUUuGUCUUUGU- -5' |
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24683 | 3' | -50 | NC_005264.1 | + | 42371 | 0.72 | 0.899672 |
Target: 5'- -gGCCGGUGCUgGCucccGCGGAGGCc -3' miRNA: 3'- caCGGCCGCGAaCGuuu-UGUCUUUGu -5' |
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24683 | 3' | -50 | NC_005264.1 | + | 96120 | 0.72 | 0.892769 |
Target: 5'- -cGCCGGCGCUUGUugcucccCGGcGACAc -3' miRNA: 3'- caCGGCCGCGAACGuuuu---GUCuUUGU- -5' |
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24683 | 3' | -50 | NC_005264.1 | + | 119264 | 0.72 | 0.885611 |
Target: 5'- cGUGCCuGGCGCcacaGCGAGGCGGGccgcucGACAu -3' miRNA: 3'- -CACGG-CCGCGaa--CGUUUUGUCU------UUGU- -5' |
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24683 | 3' | -50 | NC_005264.1 | + | 161398 | 0.72 | 0.899672 |
Target: 5'- -gGCCGGUGCUgGCucccGCGGAGGCc -3' miRNA: 3'- caCGGCCGCGAaCGuuu-UGUCUUUGu -5' |
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24683 | 3' | -50 | NC_005264.1 | + | 237 | 0.72 | 0.885611 |
Target: 5'- cGUGCCuGGCGCcacaGCGAGGCGGGccgcucGACAu -3' miRNA: 3'- -CACGG-CCGCGaa--CGUUUUGUCU------UUGU- -5' |
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24683 | 3' | -50 | NC_005264.1 | + | 131725 | 0.71 | 0.924672 |
Target: 5'- uUGCUGGCGCUcuggcgcuacaaUGCGcuACGGcGACAa -3' miRNA: 3'- cACGGCCGCGA------------ACGUuuUGUCuUUGU- -5' |
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24683 | 3' | -50 | NC_005264.1 | + | 250 | 0.71 | 0.93558 |
Target: 5'- uGUGCggCGGCGCUggacGCG--GCAGAAGCc -3' miRNA: 3'- -CACG--GCCGCGAa---CGUuuUGUCUUUGu -5' |
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24683 | 3' | -50 | NC_005264.1 | + | 61560 | 0.71 | 0.93558 |
Target: 5'- -cGUCGGCGCUaaGCuacGCAGAAACu -3' miRNA: 3'- caCGGCCGCGAa-CGuuuUGUCUUUGu -5' |
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24683 | 3' | -50 | NC_005264.1 | + | 95336 | 0.71 | 0.93558 |
Target: 5'- -cGCCgGGCGCc-GCGAAACGGAcucGGCGg -3' miRNA: 3'- caCGG-CCGCGaaCGUUUUGUCU---UUGU- -5' |
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24683 | 3' | -50 | NC_005264.1 | + | 120292 | 0.71 | 0.924672 |
Target: 5'- cUGCCGGCGCgaagacGC---GCGGAAGCu -3' miRNA: 3'- cACGGCCGCGaa----CGuuuUGUCUUUGu -5' |
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24683 | 3' | -50 | NC_005264.1 | + | 148458 | 0.71 | 0.930259 |
Target: 5'- -aGCCGGCGCccGCGAGGgAauGAAGCGc -3' miRNA: 3'- caCGGCCGCGaaCGUUUUgU--CUUUGU- -5' |
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24683 | 3' | -50 | NC_005264.1 | + | 25611 | 0.7 | 0.958251 |
Target: 5'- -gGCCGGCGUU-GCGGAacACGGcgGCGg -3' miRNA: 3'- caCGGCCGCGAaCGUUU--UGUCuuUGU- -5' |
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24683 | 3' | -50 | NC_005264.1 | + | 156072 | 0.7 | 0.954231 |
Target: 5'- aUGCCGGCGCUgcGCGAAuACAucGAugAACAc -3' miRNA: 3'- cACGGCCGCGAa-CGUUU-UGU--CU--UUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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