miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24683 3' -50 NC_005264.1 + 114994 1.1 0.008895
Target:  5'- cGUGCCGGCGCUUGCAAAACAGAAACAu -3'
miRNA:   3'- -CACGGCCGCGAACGUUUUGUCUUUGU- -5'
24683 3' -50 NC_005264.1 + 120738 0.79 0.571368
Target:  5'- gGUGCCGGCGacUGCGAcGACAGGGAUAu -3'
miRNA:   3'- -CACGGCCGCgaACGUU-UUGUCUUUGU- -5'
24683 3' -50 NC_005264.1 + 73468 0.78 0.614322
Target:  5'- -aGCCGGCGCUUGCcgu-CAGGAAg- -3'
miRNA:   3'- caCGGCCGCGAACGuuuuGUCUUUgu -5'
24683 3' -50 NC_005264.1 + 130844 0.75 0.752331
Target:  5'- -aGCuCGGCGCauaacggaGCGAAGCAGGAGCGg -3'
miRNA:   3'- caCG-GCCGCGaa------CGUUUUGUCUUUGU- -5'
24683 3' -50 NC_005264.1 + 150865 0.74 0.82886
Target:  5'- cGUGCCGcGCGCg-GCAAGACAuGGGCGc -3'
miRNA:   3'- -CACGGC-CGCGaaCGUUUUGUcUUUGU- -5'
24683 3' -50 NC_005264.1 + 31839 0.74 0.82886
Target:  5'- cGUGCCGcGCGCg-GCAAGACAuGGGCGc -3'
miRNA:   3'- -CACGGC-CGCGaaCGUUUUGUcUUUGU- -5'
24683 3' -50 NC_005264.1 + 29781 0.73 0.870552
Target:  5'- cUGUCGGC-UUUGCGAGcCAGAAACAc -3'
miRNA:   3'- cACGGCCGcGAACGUUUuGUCUUUGU- -5'
24683 3' -50 NC_005264.1 + 237 0.72 0.885611
Target:  5'- cGUGCCuGGCGCcacaGCGAGGCGGGccgcucGACAu -3'
miRNA:   3'- -CACGG-CCGCGaa--CGUUUUGUCU------UUGU- -5'
24683 3' -50 NC_005264.1 + 119264 0.72 0.885611
Target:  5'- cGUGCCuGGCGCcacaGCGAGGCGGGccgcucGACAu -3'
miRNA:   3'- -CACGG-CCGCGaa--CGUUUUGUCU------UUGU- -5'
24683 3' -50 NC_005264.1 + 96120 0.72 0.892769
Target:  5'- -cGCCGGCGCUUGUugcucccCGGcGACAc -3'
miRNA:   3'- caCGGCCGCGAACGuuuu---GUCuUUGU- -5'
24683 3' -50 NC_005264.1 + 42371 0.72 0.899672
Target:  5'- -gGCCGGUGCUgGCucccGCGGAGGCc -3'
miRNA:   3'- caCGGCCGCGAaCGuuu-UGUCUUUGu -5'
24683 3' -50 NC_005264.1 + 161398 0.72 0.899672
Target:  5'- -gGCCGGUGCUgGCucccGCGGAGGCc -3'
miRNA:   3'- caCGGCCGCGAaCGuuu-UGUCUUUGu -5'
24683 3' -50 NC_005264.1 + 131725 0.71 0.924672
Target:  5'- uUGCUGGCGCUcuggcgcuacaaUGCGcuACGGcGACAa -3'
miRNA:   3'- cACGGCCGCGA------------ACGUuuUGUCuUUGU- -5'
24683 3' -50 NC_005264.1 + 120292 0.71 0.924672
Target:  5'- cUGCCGGCGCgaagacGC---GCGGAAGCu -3'
miRNA:   3'- cACGGCCGCGaa----CGuuuUGUCUUUGu -5'
24683 3' -50 NC_005264.1 + 148458 0.71 0.930259
Target:  5'- -aGCCGGCGCccGCGAGGgAauGAAGCGc -3'
miRNA:   3'- caCGGCCGCGaaCGUUUUgU--CUUUGU- -5'
24683 3' -50 NC_005264.1 + 250 0.71 0.93558
Target:  5'- uGUGCggCGGCGCUggacGCG--GCAGAAGCc -3'
miRNA:   3'- -CACG--GCCGCGAa---CGUuuUGUCUUUGu -5'
24683 3' -50 NC_005264.1 + 95336 0.71 0.93558
Target:  5'- -cGCCgGGCGCc-GCGAAACGGAcucGGCGg -3'
miRNA:   3'- caCGG-CCGCGaaCGUUUUGUCU---UUGU- -5'
24683 3' -50 NC_005264.1 + 61560 0.71 0.93558
Target:  5'- -cGUCGGCGCUaaGCuacGCAGAAACu -3'
miRNA:   3'- caCGGCCGCGAa-CGuuuUGUCUUUGu -5'
24683 3' -50 NC_005264.1 + 114067 0.7 0.938645
Target:  5'- -cGCCGGC-CUUGCAcucuaugucgaacGACAGGAGCu -3'
miRNA:   3'- caCGGCCGcGAACGUu------------UUGUCUUUGu -5'
24683 3' -50 NC_005264.1 + 73052 0.7 0.940636
Target:  5'- -cGCCGGCGgUaUGCGGc-CAGAGACGu -3'
miRNA:   3'- caCGGCCGCgA-ACGUUuuGUCUUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.