Results 21 - 40 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24683 | 3' | -50 | NC_005264.1 | + | 4012 | 0.7 | 0.949958 |
Target: 5'- cUGUCGGCugacUGUAGAGCGGggGCAa -3' miRNA: 3'- cACGGCCGcga-ACGUUUUGUCuuUGU- -5' |
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24683 | 3' | -50 | NC_005264.1 | + | 98669 | 0.7 | 0.949958 |
Target: 5'- gGUGUCGGCGCUaGCuuAGaGGGAGCc -3' miRNA: 3'- -CACGGCCGCGAaCGuuUUgUCUUUGu -5' |
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24683 | 3' | -50 | NC_005264.1 | + | 66497 | 0.7 | 0.954231 |
Target: 5'- cGUGCCGGCGauggcGCGGuACAGcGAGCGu -3' miRNA: 3'- -CACGGCCGCgaa--CGUUuUGUC-UUUGU- -5' |
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24683 | 3' | -50 | NC_005264.1 | + | 156072 | 0.7 | 0.954231 |
Target: 5'- aUGCCGGCGCUgcGCGAAuACAucGAugAACAc -3' miRNA: 3'- cACGGCCGCGAa-CGUUU-UGU--CU--UUGU- -5' |
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24683 | 3' | -50 | NC_005264.1 | + | 25611 | 0.7 | 0.958251 |
Target: 5'- -gGCCGGCGUU-GCGGAacACGGcgGCGg -3' miRNA: 3'- caCGGCCGCGAaCGUUU--UGUCuuUGU- -5' |
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24683 | 3' | -50 | NC_005264.1 | + | 71775 | 0.7 | 0.958251 |
Target: 5'- cUGCUGGCGCc-GUu--GCAGAAGCGc -3' miRNA: 3'- cACGGCCGCGaaCGuuuUGUCUUUGU- -5' |
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24683 | 3' | -50 | NC_005264.1 | + | 57841 | 0.7 | 0.958251 |
Target: 5'- -gGCCGGUGCgcUGCAAAcggucgucagcGcCAGAGACGg -3' miRNA: 3'- caCGGCCGCGa-ACGUUU-----------U-GUCUUUGU- -5' |
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24683 | 3' | -50 | NC_005264.1 | + | 21410 | 0.7 | 0.958251 |
Target: 5'- -cGCCGGCGauaGCGAguuggccguAACAGGAGCu -3' miRNA: 3'- caCGGCCGCgaaCGUU---------UUGUCUUUGu -5' |
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24683 | 3' | -50 | NC_005264.1 | + | 20158 | 0.69 | 0.964862 |
Target: 5'- -cGCCGGCGCccaagaucgcgGCAcGACguAGAAGCAc -3' miRNA: 3'- caCGGCCGCGaa---------CGUuUUG--UCUUUGU- -5' |
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24683 | 3' | -50 | NC_005264.1 | + | 61927 | 0.69 | 0.965548 |
Target: 5'- -cGCCGcCGCUUGCGcGAAgAGGAACu -3' miRNA: 3'- caCGGCcGCGAACGU-UUUgUCUUUGu -5' |
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24683 | 3' | -50 | NC_005264.1 | + | 75850 | 0.69 | 0.965548 |
Target: 5'- -cGCCacgaGGCGC-UGCGAcucCAGAAACAg -3' miRNA: 3'- caCGG----CCGCGaACGUUuu-GUCUUUGU- -5' |
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24683 | 3' | -50 | NC_005264.1 | + | 131009 | 0.69 | 0.968839 |
Target: 5'- uUGCCGcGCGCg-GCAcgGCAGAGuACGc -3' miRNA: 3'- cACGGC-CGCGaaCGUuuUGUCUU-UGU- -5' |
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24683 | 3' | -50 | NC_005264.1 | + | 11982 | 0.69 | 0.968839 |
Target: 5'- uUGCCGcGCGCg-GCAcgGCAGAGuACGc -3' miRNA: 3'- cACGGC-CGCGaaCGUuuUGUCUU-UGU- -5' |
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24683 | 3' | -50 | NC_005264.1 | + | 159105 | 0.69 | 0.968839 |
Target: 5'- -aGCCGGCGaucGCGAGACgucggAGAAGCc -3' miRNA: 3'- caCGGCCGCgaaCGUUUUG-----UCUUUGu -5' |
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24683 | 3' | -50 | NC_005264.1 | + | 150779 | 0.69 | 0.971603 |
Target: 5'- cGUGCCagaugauauuaugGGgGCgUGUggGGCAGGAGCGc -3' miRNA: 3'- -CACGG-------------CCgCGaACGuuUUGUCUUUGU- -5' |
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24683 | 3' | -50 | NC_005264.1 | + | 36702 | 0.68 | 0.97736 |
Target: 5'- -gGCCGGCGCUaacgGCGcGuuGGAAACc -3' miRNA: 3'- caCGGCCGCGAa---CGUuUugUCUUUGu -5' |
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24683 | 3' | -50 | NC_005264.1 | + | 7072 | 0.68 | 0.97736 |
Target: 5'- -gGCCGGCGCcgucGCGcuGCGGGGAa- -3' miRNA: 3'- caCGGCCGCGaa--CGUuuUGUCUUUgu -5' |
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24683 | 3' | -50 | NC_005264.1 | + | 155728 | 0.68 | 0.97736 |
Target: 5'- -gGCCGGCGCUaacgGCGcGuuGGAAACc -3' miRNA: 3'- caCGGCCGCGAa---CGUuUugUCUUUGu -5' |
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24683 | 3' | -50 | NC_005264.1 | + | 126099 | 0.68 | 0.97736 |
Target: 5'- -gGCCGGCGCcgucGCGcuGCGGGGAa- -3' miRNA: 3'- caCGGCCGCGaa--CGUuuUGUCUUUgu -5' |
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24683 | 3' | -50 | NC_005264.1 | + | 89715 | 0.68 | 0.978834 |
Target: 5'- -cGgCGGUGCUUGUuucugcacgacguAGACAGAAACu -3' miRNA: 3'- caCgGCCGCGAACGu------------UUUGUCUUUGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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