Results 41 - 60 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24683 | 3' | -50 | NC_005264.1 | + | 106778 | 0.68 | 0.979544 |
Target: 5'- -aGCgGGCGU--GCAGaacuguuGACAGAAACAa -3' miRNA: 3'- caCGgCCGCGaaCGUU-------UUGUCUUUGU- -5' |
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24683 | 3' | -50 | NC_005264.1 | + | 68781 | 0.68 | 0.979777 |
Target: 5'- uUGCCGGCGCcaaaGCGAAAgUAGucAAACAu -3' miRNA: 3'- cACGGCCGCGaa--CGUUUU-GUC--UUUGU- -5' |
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24683 | 3' | -50 | NC_005264.1 | + | 22742 | 0.68 | 0.979777 |
Target: 5'- cUGcCCGGUGCUggGCGAAGCGauAGCGg -3' miRNA: 3'- cAC-GGCCGCGAa-CGUUUUGUcuUUGU- -5' |
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24683 | 3' | -50 | NC_005264.1 | + | 38607 | 0.68 | 0.981996 |
Target: 5'- aUGCCGaGCGCg-GCGAAGggguuagcCAGGAACGa -3' miRNA: 3'- cACGGC-CGCGaaCGUUUU--------GUCUUUGU- -5' |
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24683 | 3' | -50 | NC_005264.1 | + | 155788 | 0.68 | 0.984028 |
Target: 5'- -gGCCGGCGCcgucgccgcUUGCGc-GCAGAAuACGa -3' miRNA: 3'- caCGGCCGCG---------AACGUuuUGUCUU-UGU- -5' |
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24683 | 3' | -50 | NC_005264.1 | + | 137983 | 0.68 | 0.984028 |
Target: 5'- -aGCCguGGCGgaUGcCAAGAUAGAAACc -3' miRNA: 3'- caCGG--CCGCgaAC-GUUUUGUCUUUGu -5' |
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24683 | 3' | -50 | NC_005264.1 | + | 77971 | 0.68 | 0.984028 |
Target: 5'- cUGCCGGCGCcgcGCGu-ACcGGAGCGg -3' miRNA: 3'- cACGGCCGCGaa-CGUuuUGuCUUUGU- -5' |
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24683 | 3' | -50 | NC_005264.1 | + | 36762 | 0.68 | 0.984028 |
Target: 5'- -gGCCGGCGCcgucgccgcUUGCGc-GCAGAAuACGa -3' miRNA: 3'- caCGGCCGCG---------AACGUuuUGUCUU-UGU- -5' |
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24683 | 3' | -50 | NC_005264.1 | + | 58317 | 0.68 | 0.98588 |
Target: 5'- -cGCCGGCuGCccGCGAAG-GGGAACAa -3' miRNA: 3'- caCGGCCG-CGaaCGUUUUgUCUUUGU- -5' |
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24683 | 3' | -50 | NC_005264.1 | + | 124987 | 0.68 | 0.98588 |
Target: 5'- -gGCagCGGCGCaUUcGCGGAugGGAGACGu -3' miRNA: 3'- caCG--GCCGCG-AA-CGUUUugUCUUUGU- -5' |
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24683 | 3' | -50 | NC_005264.1 | + | 105692 | 0.68 | 0.98588 |
Target: 5'- -cGCCGGCGCa---AAGACAGAccAGCc -3' miRNA: 3'- caCGGCCGCGaacgUUUUGUCU--UUGu -5' |
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24683 | 3' | -50 | NC_005264.1 | + | 162704 | 0.68 | 0.98588 |
Target: 5'- -cGCCGGCGUUaagGCGgccgccgggGAGCGGGAAa- -3' miRNA: 3'- caCGGCCGCGAa--CGU---------UUUGUCUUUgu -5' |
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24683 | 3' | -50 | NC_005264.1 | + | 154541 | 0.68 | 0.98588 |
Target: 5'- cGUGCCGGCGaugGCAc-GCGGAu--- -3' miRNA: 3'- -CACGGCCGCgaaCGUuuUGUCUuugu -5' |
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24683 | 3' | -50 | NC_005264.1 | + | 43678 | 0.68 | 0.98588 |
Target: 5'- -cGCCGGCGUUaagGCGgccgccgggGAGCGGGAAa- -3' miRNA: 3'- caCGGCCGCGAa--CGU---------UUUGUCUUUgu -5' |
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24683 | 3' | -50 | NC_005264.1 | + | 66737 | 0.68 | 0.98588 |
Target: 5'- -cGCCGGCGCcuaaaccgcgGCAAcaguagccgcAACGGAuACAg -3' miRNA: 3'- caCGGCCGCGaa--------CGUU----------UUGUCUuUGU- -5' |
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24683 | 3' | -50 | NC_005264.1 | + | 126027 | 0.67 | 0.987564 |
Target: 5'- -cGCCGcGCcucGCcUGCGccGCAGAGACAa -3' miRNA: 3'- caCGGC-CG---CGaACGUuuUGUCUUUGU- -5' |
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24683 | 3' | -50 | NC_005264.1 | + | 58373 | 0.67 | 0.987564 |
Target: 5'- -gGCCGGCGCgauaUGCGccggauuguccaAGACuGGGACu -3' miRNA: 3'- caCGGCCGCGa---ACGU------------UUUGuCUUUGu -5' |
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24683 | 3' | -50 | NC_005264.1 | + | 41424 | 0.67 | 0.989088 |
Target: 5'- -gGCCGGCGCcggGCuccuGCGGGcGACGg -3' miRNA: 3'- caCGGCCGCGaa-CGuuu-UGUCU-UUGU- -5' |
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24683 | 3' | -50 | NC_005264.1 | + | 113261 | 0.67 | 0.989088 |
Target: 5'- -cGCCGGCGgCgUGCGccgagAAGguGAAGCGg -3' miRNA: 3'- caCGGCCGC-GaACGU-----UUUguCUUUGU- -5' |
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24683 | 3' | -50 | NC_005264.1 | + | 98674 | 0.67 | 0.989088 |
Target: 5'- aGUGCuggCGGCGCUUGCAcaccGGcCGGAucGCGg -3' miRNA: 3'- -CACG---GCCGCGAACGU----UUuGUCUu-UGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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