miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24683 3' -50 NC_005264.1 + 135137 0.66 0.993787
Target:  5'- uGUGCgcauugagagCGaGCGUcgGCGAGGCAGAGGCc -3'
miRNA:   3'- -CACG----------GC-CGCGaaCGUUUUGUCUUUGu -5'
24683 3' -50 NC_005264.1 + 1171 0.66 0.993787
Target:  5'- cUGCCGGCGC--GCGAuggggguacgcAGCGGAccgGGCGu -3'
miRNA:   3'- cACGGCCGCGaaCGUU-----------UUGUCU---UUGU- -5'
24683 3' -50 NC_005264.1 + 144303 0.66 0.993787
Target:  5'- -cGCCGGCGCgcccucAGGgGGAGACGg -3'
miRNA:   3'- caCGGCCGCGaacgu-UUUgUCUUUGU- -5'
24683 3' -50 NC_005264.1 + 33983 0.66 0.993599
Target:  5'- -cGCUGGCGaccagagcggGCAAGACgccGGAGACGa -3'
miRNA:   3'- caCGGCCGCgaa-------CGUUUUG---UCUUUGU- -5'
24683 3' -50 NC_005264.1 + 133491 0.67 0.992802
Target:  5'- -aGCCGGCGUacccgGCAGAcgucguagccGCAGGAGg- -3'
miRNA:   3'- caCGGCCGCGaa---CGUUU----------UGUCUUUgu -5'
24683 3' -50 NC_005264.1 + 100796 0.67 0.992155
Target:  5'- -cGCUGGCGCagcaggcuccgaaccUUGCuagagcgcGACAGGGACGa -3'
miRNA:   3'- caCGGCCGCG---------------AACGuu------UUGUCUUUGU- -5'
24683 3' -50 NC_005264.1 + 136371 0.67 0.991698
Target:  5'- cUGCCGGCGCgaauagcgcUGUGGAGCGauGGCGa -3'
miRNA:   3'- cACGGCCGCGa--------ACGUUUUGUcuUUGU- -5'
24683 3' -50 NC_005264.1 + 31273 0.67 0.991698
Target:  5'- -cGCCaGGUGCcgcGCAcauGCAGAAGCGu -3'
miRNA:   3'- caCGG-CCGCGaa-CGUuu-UGUCUUUGU- -5'
24683 3' -50 NC_005264.1 + 88116 0.67 0.991698
Target:  5'- -gGCCGGCGCggUUGCGu-ACGGGcuGAUg -3'
miRNA:   3'- caCGGCCGCG--AACGUuuUGUCU--UUGu -5'
24683 3' -50 NC_005264.1 + 9918 0.67 0.99158
Target:  5'- -aGgCGGCGCUaucucgcgcuaggUuCGAAGCAGAGACGc -3'
miRNA:   3'- caCgGCCGCGA-------------AcGUUUUGUCUUUGU- -5'
24683 3' -50 NC_005264.1 + 128944 0.67 0.99158
Target:  5'- -aGgCGGCGCUaucucgcgcuaggUuCGAAGCAGAGACGc -3'
miRNA:   3'- caCgGCCGCGA-------------AcGUUUUGUCUUUGU- -5'
24683 3' -50 NC_005264.1 + 120098 0.67 0.990463
Target:  5'- cGUGCCcaccgGGUGCcgcGCAGAAguGggGCGc -3'
miRNA:   3'- -CACGG-----CCGCGaa-CGUUUUguCuuUGU- -5'
24683 3' -50 NC_005264.1 + 160451 0.67 0.989088
Target:  5'- -gGCCGGCGCcggGCuccuGCGGGcGACGg -3'
miRNA:   3'- caCGGCCGCGaa-CGuuu-UGUCU-UUGU- -5'
24683 3' -50 NC_005264.1 + 113261 0.67 0.989088
Target:  5'- -cGCCGGCGgCgUGCGccgagAAGguGAAGCGg -3'
miRNA:   3'- caCGGCCGC-GaACGU-----UUUguCUUUGU- -5'
24683 3' -50 NC_005264.1 + 98674 0.67 0.989088
Target:  5'- aGUGCuggCGGCGCUUGCAcaccGGcCGGAucGCGg -3'
miRNA:   3'- -CACG---GCCGCGAACGU----UUuGUCUu-UGU- -5'
24683 3' -50 NC_005264.1 + 41424 0.67 0.989088
Target:  5'- -gGCCGGCGCcggGCuccuGCGGGcGACGg -3'
miRNA:   3'- caCGGCCGCGaa-CGuuu-UGUCU-UUGU- -5'
24683 3' -50 NC_005264.1 + 126027 0.67 0.987564
Target:  5'- -cGCCGcGCcucGCcUGCGccGCAGAGACAa -3'
miRNA:   3'- caCGGC-CG---CGaACGUuuUGUCUUUGU- -5'
24683 3' -50 NC_005264.1 + 58373 0.67 0.987564
Target:  5'- -gGCCGGCGCgauaUGCGccggauuguccaAGACuGGGACu -3'
miRNA:   3'- caCGGCCGCGa---ACGU------------UUUGuCUUUGu -5'
24683 3' -50 NC_005264.1 + 154541 0.68 0.98588
Target:  5'- cGUGCCGGCGaugGCAc-GCGGAu--- -3'
miRNA:   3'- -CACGGCCGCgaaCGUuuUGUCUuugu -5'
24683 3' -50 NC_005264.1 + 66737 0.68 0.98588
Target:  5'- -cGCCGGCGCcuaaaccgcgGCAAcaguagccgcAACGGAuACAg -3'
miRNA:   3'- caCGGCCGCGaa--------CGUU----------UUGUCUuUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.