miRNA display CGI


Results 41 - 60 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24683 3' -50 NC_005264.1 + 58317 0.68 0.98588
Target:  5'- -cGCCGGCuGCccGCGAAG-GGGAACAa -3'
miRNA:   3'- caCGGCCG-CGaaCGUUUUgUCUUUGU- -5'
24683 3' -50 NC_005264.1 + 124987 0.68 0.98588
Target:  5'- -gGCagCGGCGCaUUcGCGGAugGGAGACGu -3'
miRNA:   3'- caCG--GCCGCG-AA-CGUUUugUCUUUGU- -5'
24683 3' -50 NC_005264.1 + 66737 0.68 0.98588
Target:  5'- -cGCCGGCGCcuaaaccgcgGCAAcaguagccgcAACGGAuACAg -3'
miRNA:   3'- caCGGCCGCGaa--------CGUU----------UUGUCUuUGU- -5'
24683 3' -50 NC_005264.1 + 43678 0.68 0.98588
Target:  5'- -cGCCGGCGUUaagGCGgccgccgggGAGCGGGAAa- -3'
miRNA:   3'- caCGGCCGCGAa--CGU---------UUUGUCUUUgu -5'
24683 3' -50 NC_005264.1 + 154541 0.68 0.98588
Target:  5'- cGUGCCGGCGaugGCAc-GCGGAu--- -3'
miRNA:   3'- -CACGGCCGCgaaCGUuuUGUCUuugu -5'
24683 3' -50 NC_005264.1 + 36762 0.68 0.984028
Target:  5'- -gGCCGGCGCcgucgccgcUUGCGc-GCAGAAuACGa -3'
miRNA:   3'- caCGGCCGCG---------AACGUuuUGUCUU-UGU- -5'
24683 3' -50 NC_005264.1 + 77971 0.68 0.984028
Target:  5'- cUGCCGGCGCcgcGCGu-ACcGGAGCGg -3'
miRNA:   3'- cACGGCCGCGaa-CGUuuUGuCUUUGU- -5'
24683 3' -50 NC_005264.1 + 155788 0.68 0.984028
Target:  5'- -gGCCGGCGCcgucgccgcUUGCGc-GCAGAAuACGa -3'
miRNA:   3'- caCGGCCGCG---------AACGUuuUGUCUU-UGU- -5'
24683 3' -50 NC_005264.1 + 137983 0.68 0.984028
Target:  5'- -aGCCguGGCGgaUGcCAAGAUAGAAACc -3'
miRNA:   3'- caCGG--CCGCgaAC-GUUUUGUCUUUGu -5'
24683 3' -50 NC_005264.1 + 38607 0.68 0.981996
Target:  5'- aUGCCGaGCGCg-GCGAAGggguuagcCAGGAACGa -3'
miRNA:   3'- cACGGC-CGCGaaCGUUUU--------GUCUUUGU- -5'
24683 3' -50 NC_005264.1 + 68781 0.68 0.979777
Target:  5'- uUGCCGGCGCcaaaGCGAAAgUAGucAAACAu -3'
miRNA:   3'- cACGGCCGCGaa--CGUUUU-GUC--UUUGU- -5'
24683 3' -50 NC_005264.1 + 22742 0.68 0.979777
Target:  5'- cUGcCCGGUGCUggGCGAAGCGauAGCGg -3'
miRNA:   3'- cAC-GGCCGCGAa-CGUUUUGUcuUUGU- -5'
24683 3' -50 NC_005264.1 + 106778 0.68 0.979544
Target:  5'- -aGCgGGCGU--GCAGaacuguuGACAGAAACAa -3'
miRNA:   3'- caCGgCCGCGaaCGUU-------UUGUCUUUGU- -5'
24683 3' -50 NC_005264.1 + 89715 0.68 0.978834
Target:  5'- -cGgCGGUGCUUGUuucugcacgacguAGACAGAAACu -3'
miRNA:   3'- caCgGCCGCGAACGu------------UUUGUCUUUGu -5'
24683 3' -50 NC_005264.1 + 155728 0.68 0.97736
Target:  5'- -gGCCGGCGCUaacgGCGcGuuGGAAACc -3'
miRNA:   3'- caCGGCCGCGAa---CGUuUugUCUUUGu -5'
24683 3' -50 NC_005264.1 + 126099 0.68 0.97736
Target:  5'- -gGCCGGCGCcgucGCGcuGCGGGGAa- -3'
miRNA:   3'- caCGGCCGCGaa--CGUuuUGUCUUUgu -5'
24683 3' -50 NC_005264.1 + 7072 0.68 0.97736
Target:  5'- -gGCCGGCGCcgucGCGcuGCGGGGAa- -3'
miRNA:   3'- caCGGCCGCGaa--CGUuuUGUCUUUgu -5'
24683 3' -50 NC_005264.1 + 36702 0.68 0.97736
Target:  5'- -gGCCGGCGCUaacgGCGcGuuGGAAACc -3'
miRNA:   3'- caCGGCCGCGAa---CGUuUugUCUUUGu -5'
24683 3' -50 NC_005264.1 + 150779 0.69 0.971603
Target:  5'- cGUGCCagaugauauuaugGGgGCgUGUggGGCAGGAGCGc -3'
miRNA:   3'- -CACGG-------------CCgCGaACGuuUUGUCUUUGU- -5'
24683 3' -50 NC_005264.1 + 11982 0.69 0.968839
Target:  5'- uUGCCGcGCGCg-GCAcgGCAGAGuACGc -3'
miRNA:   3'- cACGGC-CGCGaaCGUuuUGUCUU-UGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.