miRNA display CGI


Results 61 - 80 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24683 3' -50 NC_005264.1 + 159105 0.69 0.968839
Target:  5'- -aGCCGGCGaucGCGAGACgucggAGAAGCc -3'
miRNA:   3'- caCGGCCGCgaaCGUUUUG-----UCUUUGu -5'
24683 3' -50 NC_005264.1 + 131009 0.69 0.968839
Target:  5'- uUGCCGcGCGCg-GCAcgGCAGAGuACGc -3'
miRNA:   3'- cACGGC-CGCGaaCGUuuUGUCUU-UGU- -5'
24683 3' -50 NC_005264.1 + 75850 0.69 0.965548
Target:  5'- -cGCCacgaGGCGC-UGCGAcucCAGAAACAg -3'
miRNA:   3'- caCGG----CCGCGaACGUUuu-GUCUUUGU- -5'
24683 3' -50 NC_005264.1 + 61927 0.69 0.965548
Target:  5'- -cGCCGcCGCUUGCGcGAAgAGGAACu -3'
miRNA:   3'- caCGGCcGCGAACGU-UUUgUCUUUGu -5'
24683 3' -50 NC_005264.1 + 20158 0.69 0.964862
Target:  5'- -cGCCGGCGCccaagaucgcgGCAcGACguAGAAGCAc -3'
miRNA:   3'- caCGGCCGCGaa---------CGUuUUG--UCUUUGU- -5'
24683 3' -50 NC_005264.1 + 57841 0.7 0.958251
Target:  5'- -gGCCGGUGCgcUGCAAAcggucgucagcGcCAGAGACGg -3'
miRNA:   3'- caCGGCCGCGa-ACGUUU-----------U-GUCUUUGU- -5'
24683 3' -50 NC_005264.1 + 71775 0.7 0.958251
Target:  5'- cUGCUGGCGCc-GUu--GCAGAAGCGc -3'
miRNA:   3'- cACGGCCGCGaaCGuuuUGUCUUUGU- -5'
24683 3' -50 NC_005264.1 + 25611 0.7 0.958251
Target:  5'- -gGCCGGCGUU-GCGGAacACGGcgGCGg -3'
miRNA:   3'- caCGGCCGCGAaCGUUU--UGUCuuUGU- -5'
24683 3' -50 NC_005264.1 + 21410 0.7 0.958251
Target:  5'- -cGCCGGCGauaGCGAguuggccguAACAGGAGCu -3'
miRNA:   3'- caCGGCCGCgaaCGUU---------UUGUCUUUGu -5'
24683 3' -50 NC_005264.1 + 156072 0.7 0.954231
Target:  5'- aUGCCGGCGCUgcGCGAAuACAucGAugAACAc -3'
miRNA:   3'- cACGGCCGCGAa-CGUUU-UGU--CU--UUGU- -5'
24683 3' -50 NC_005264.1 + 66497 0.7 0.954231
Target:  5'- cGUGCCGGCGauggcGCGGuACAGcGAGCGu -3'
miRNA:   3'- -CACGGCCGCgaa--CGUUuUGUC-UUUGU- -5'
24683 3' -50 NC_005264.1 + 4012 0.7 0.949958
Target:  5'- cUGUCGGCugacUGUAGAGCGGggGCAa -3'
miRNA:   3'- cACGGCCGcga-ACGUUUUGUCuuUGU- -5'
24683 3' -50 NC_005264.1 + 98669 0.7 0.949958
Target:  5'- gGUGUCGGCGCUaGCuuAGaGGGAGCc -3'
miRNA:   3'- -CACGGCCGCGAaCGuuUUgUCUUUGu -5'
24683 3' -50 NC_005264.1 + 73052 0.7 0.940636
Target:  5'- -cGCCGGCGgUaUGCGGc-CAGAGACGu -3'
miRNA:   3'- caCGGCCGCgA-ACGUUuuGUCUUUGU- -5'
24683 3' -50 NC_005264.1 + 114067 0.7 0.938645
Target:  5'- -cGCCGGC-CUUGCAcucuaugucgaacGACAGGAGCu -3'
miRNA:   3'- caCGGCCGcGAACGUu------------UUGUCUUUGu -5'
24683 3' -50 NC_005264.1 + 95336 0.71 0.93558
Target:  5'- -cGCCgGGCGCc-GCGAAACGGAcucGGCGg -3'
miRNA:   3'- caCGG-CCGCGaaCGUUUUGUCU---UUGU- -5'
24683 3' -50 NC_005264.1 + 250 0.71 0.93558
Target:  5'- uGUGCggCGGCGCUggacGCG--GCAGAAGCc -3'
miRNA:   3'- -CACG--GCCGCGAa---CGUuuUGUCUUUGu -5'
24683 3' -50 NC_005264.1 + 61560 0.71 0.93558
Target:  5'- -cGUCGGCGCUaaGCuacGCAGAAACu -3'
miRNA:   3'- caCGGCCGCGAa-CGuuuUGUCUUUGu -5'
24683 3' -50 NC_005264.1 + 148458 0.71 0.930259
Target:  5'- -aGCCGGCGCccGCGAGGgAauGAAGCGc -3'
miRNA:   3'- caCGGCCGCGaaCGUUUUgU--CUUUGU- -5'
24683 3' -50 NC_005264.1 + 131725 0.71 0.924672
Target:  5'- uUGCUGGCGCUcuggcgcuacaaUGCGcuACGGcGACAa -3'
miRNA:   3'- cACGGCCGCGA------------ACGUuuUGUCuUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.