miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24683 3' -50 NC_005264.1 + 237 0.72 0.885611
Target:  5'- cGUGCCuGGCGCcacaGCGAGGCGGGccgcucGACAu -3'
miRNA:   3'- -CACGG-CCGCGaa--CGUUUUGUCU------UUGU- -5'
24683 3' -50 NC_005264.1 + 250 0.71 0.93558
Target:  5'- uGUGCggCGGCGCUggacGCG--GCAGAAGCc -3'
miRNA:   3'- -CACG--GCCGCGAa---CGUuuUGUCUUUGu -5'
24683 3' -50 NC_005264.1 + 1171 0.66 0.993787
Target:  5'- cUGCCGGCGC--GCGAuggggguacgcAGCGGAccgGGCGu -3'
miRNA:   3'- cACGGCCGCGaaCGUU-----------UUGUCU---UUGU- -5'
24683 3' -50 NC_005264.1 + 4012 0.7 0.949958
Target:  5'- cUGUCGGCugacUGUAGAGCGGggGCAa -3'
miRNA:   3'- cACGGCCGcga-ACGUUUUGUCuuUGU- -5'
24683 3' -50 NC_005264.1 + 5961 0.66 0.995431
Target:  5'- -gGCagCGGCGCaUUcGCGGAugGGAGACu -3'
miRNA:   3'- caCG--GCCGCG-AA-CGUUUugUCUUUGu -5'
24683 3' -50 NC_005264.1 + 7072 0.68 0.97736
Target:  5'- -gGCCGGCGCcgucGCGcuGCGGGGAa- -3'
miRNA:   3'- caCGGCCGCGaa--CGUuuUGUCUUUgu -5'
24683 3' -50 NC_005264.1 + 7988 0.66 0.995431
Target:  5'- cGUGCaCGGgcCGCcaUUGCGGggccGGCAGAGGCGc -3'
miRNA:   3'- -CACG-GCC--GCG--AACGUU----UUGUCUUUGU- -5'
24683 3' -50 NC_005264.1 + 9918 0.67 0.99158
Target:  5'- -aGgCGGCGCUaucucgcgcuaggUuCGAAGCAGAGACGc -3'
miRNA:   3'- caCgGCCGCGA-------------AcGUUUUGUCUUUGU- -5'
24683 3' -50 NC_005264.1 + 11982 0.69 0.968839
Target:  5'- uUGCCGcGCGCg-GCAcgGCAGAGuACGc -3'
miRNA:   3'- cACGGC-CGCGaaCGUuuUGUCUU-UGU- -5'
24683 3' -50 NC_005264.1 + 18141 0.66 0.996702
Target:  5'- cUGuCUGGCGCgaGCGGcuaAGAGACAg -3'
miRNA:   3'- cAC-GGCCGCGaaCGUUuugUCUUUGU- -5'
24683 3' -50 NC_005264.1 + 20158 0.69 0.964862
Target:  5'- -cGCCGGCGCccaagaucgcgGCAcGACguAGAAGCAc -3'
miRNA:   3'- caCGGCCGCGaa---------CGUuUUG--UCUUUGU- -5'
24683 3' -50 NC_005264.1 + 21410 0.7 0.958251
Target:  5'- -cGCCGGCGauaGCGAguuggccguAACAGGAGCu -3'
miRNA:   3'- caCGGCCGCgaaCGUU---------UUGUCUUUGu -5'
24683 3' -50 NC_005264.1 + 22742 0.68 0.979777
Target:  5'- cUGcCCGGUGCUggGCGAAGCGauAGCGg -3'
miRNA:   3'- cAC-GGCCGCGAa-CGUUUUGUcuUUGU- -5'
24683 3' -50 NC_005264.1 + 24954 0.66 0.996646
Target:  5'- uGUGCCguaccagGGCGCU-GCGccGAAuCGGAAACu -3'
miRNA:   3'- -CACGG-------CCGCGAaCGU--UUU-GUCUUUGu -5'
24683 3' -50 NC_005264.1 + 25611 0.7 0.958251
Target:  5'- -gGCCGGCGUU-GCGGAacACGGcgGCGg -3'
miRNA:   3'- caCGGCCGCGAaCGUUU--UGUCuuUGU- -5'
24683 3' -50 NC_005264.1 + 29781 0.73 0.870552
Target:  5'- cUGUCGGC-UUUGCGAGcCAGAAACAc -3'
miRNA:   3'- cACGGCCGcGAACGUUUuGUCUUUGU- -5'
24683 3' -50 NC_005264.1 + 30075 0.66 0.99466
Target:  5'- -cGUCGGCGCcgccGCGcccGGACAGAAucGCGa -3'
miRNA:   3'- caCGGCCGCGaa--CGU---UUUGUCUU--UGU- -5'
24683 3' -50 NC_005264.1 + 31273 0.67 0.991698
Target:  5'- -cGCCaGGUGCcgcGCAcauGCAGAAGCGu -3'
miRNA:   3'- caCGG-CCGCGaa-CGUuu-UGUCUUUGU- -5'
24683 3' -50 NC_005264.1 + 31839 0.74 0.82886
Target:  5'- cGUGCCGcGCGCg-GCAAGACAuGGGCGc -3'
miRNA:   3'- -CACGGC-CGCGaaCGUUUUGUcUUUGU- -5'
24683 3' -50 NC_005264.1 + 33983 0.66 0.993599
Target:  5'- -cGCUGGCGaccagagcggGCAAGACgccGGAGACGa -3'
miRNA:   3'- caCGGCCGCgaa-------CGUUUUG---UCUUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.