miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24683 3' -50 NC_005264.1 + 36702 0.68 0.97736
Target:  5'- -gGCCGGCGCUaacgGCGcGuuGGAAACc -3'
miRNA:   3'- caCGGCCGCGAa---CGUuUugUCUUUGu -5'
24683 3' -50 NC_005264.1 + 36762 0.68 0.984028
Target:  5'- -gGCCGGCGCcgucgccgcUUGCGc-GCAGAAuACGa -3'
miRNA:   3'- caCGGCCGCG---------AACGUuuUGUCUU-UGU- -5'
24683 3' -50 NC_005264.1 + 38607 0.68 0.981996
Target:  5'- aUGCCGaGCGCg-GCGAAGggguuagcCAGGAACGa -3'
miRNA:   3'- cACGGC-CGCGaaCGUUUU--------GUCUUUGU- -5'
24683 3' -50 NC_005264.1 + 41424 0.67 0.989088
Target:  5'- -gGCCGGCGCcggGCuccuGCGGGcGACGg -3'
miRNA:   3'- caCGGCCGCGaa-CGuuu-UGUCU-UUGU- -5'
24683 3' -50 NC_005264.1 + 42371 0.72 0.899672
Target:  5'- -gGCCGGUGCUgGCucccGCGGAGGCc -3'
miRNA:   3'- caCGGCCGCGAaCGuuu-UGUCUUUGu -5'
24683 3' -50 NC_005264.1 + 43678 0.68 0.98588
Target:  5'- -cGCCGGCGUUaagGCGgccgccgggGAGCGGGAAa- -3'
miRNA:   3'- caCGGCCGCGAa--CGU---------UUUGUCUUUgu -5'
24683 3' -50 NC_005264.1 + 57841 0.7 0.958251
Target:  5'- -gGCCGGUGCgcUGCAAAcggucgucagcGcCAGAGACGg -3'
miRNA:   3'- caCGGCCGCGa-ACGUUU-----------U-GUCUUUGU- -5'
24683 3' -50 NC_005264.1 + 58317 0.68 0.98588
Target:  5'- -cGCCGGCuGCccGCGAAG-GGGAACAa -3'
miRNA:   3'- caCGGCCG-CGaaCGUUUUgUCUUUGU- -5'
24683 3' -50 NC_005264.1 + 58373 0.67 0.987564
Target:  5'- -gGCCGGCGCgauaUGCGccggauuguccaAGACuGGGACu -3'
miRNA:   3'- caCGGCCGCGa---ACGU------------UUUGuCUUUGu -5'
24683 3' -50 NC_005264.1 + 61560 0.71 0.93558
Target:  5'- -cGUCGGCGCUaaGCuacGCAGAAACu -3'
miRNA:   3'- caCGGCCGCGAa-CGuuuUGUCUUUGu -5'
24683 3' -50 NC_005264.1 + 61927 0.69 0.965548
Target:  5'- -cGCCGcCGCUUGCGcGAAgAGGAACu -3'
miRNA:   3'- caCGGCcGCGAACGU-UUUgUCUUUGu -5'
24683 3' -50 NC_005264.1 + 66497 0.7 0.954231
Target:  5'- cGUGCCGGCGauggcGCGGuACAGcGAGCGu -3'
miRNA:   3'- -CACGGCCGCgaa--CGUUuUGUC-UUUGU- -5'
24683 3' -50 NC_005264.1 + 66618 0.66 0.996702
Target:  5'- uUGCCGGCGCcgucGCG--GCccGAGGCAa -3'
miRNA:   3'- cACGGCCGCGaa--CGUuuUGu-CUUUGU- -5'
24683 3' -50 NC_005264.1 + 66737 0.68 0.98588
Target:  5'- -cGCCGGCGCcuaaaccgcgGCAAcaguagccgcAACGGAuACAg -3'
miRNA:   3'- caCGGCCGCGaa--------CGUU----------UUGUCUuUGU- -5'
24683 3' -50 NC_005264.1 + 68781 0.68 0.979777
Target:  5'- uUGCCGGCGCcaaaGCGAAAgUAGucAAACAu -3'
miRNA:   3'- cACGGCCGCGaa--CGUUUU-GUC--UUUGU- -5'
24683 3' -50 NC_005264.1 + 69273 0.66 0.996109
Target:  5'- cUGCCauggGGCGC--GCGAAACAaGGAGCu -3'
miRNA:   3'- cACGG----CCGCGaaCGUUUUGU-CUUUGu -5'
24683 3' -50 NC_005264.1 + 71775 0.7 0.958251
Target:  5'- cUGCUGGCGCc-GUu--GCAGAAGCGc -3'
miRNA:   3'- cACGGCCGCGaaCGuuuUGUCUUUGU- -5'
24683 3' -50 NC_005264.1 + 73052 0.7 0.940636
Target:  5'- -cGCCGGCGgUaUGCGGc-CAGAGACGu -3'
miRNA:   3'- caCGGCCGCgA-ACGUUuuGUCUUUGU- -5'
24683 3' -50 NC_005264.1 + 73468 0.78 0.614322
Target:  5'- -aGCCGGCGCUUGCcgu-CAGGAAg- -3'
miRNA:   3'- caCGGCCGCGAACGuuuuGUCUUUgu -5'
24683 3' -50 NC_005264.1 + 75850 0.69 0.965548
Target:  5'- -cGCCacgaGGCGC-UGCGAcucCAGAAACAg -3'
miRNA:   3'- caCGG----CCGCGaACGUUuu-GUCUUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.