miRNA display CGI


Results 41 - 60 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24683 3' -50 NC_005264.1 + 77971 0.68 0.984028
Target:  5'- cUGCCGGCGCcgcGCGu-ACcGGAGCGg -3'
miRNA:   3'- cACGGCCGCGaa-CGUuuUGuCUUUGU- -5'
24683 3' -50 NC_005264.1 + 79993 0.66 0.996109
Target:  5'- aUGCCGGcCGC--GCGGAAgaGGAGGCGc -3'
miRNA:   3'- cACGGCC-GCGaaCGUUUUg-UCUUUGU- -5'
24683 3' -50 NC_005264.1 + 82316 0.66 0.996109
Target:  5'- -cGCCGGCGC-UGCAAuuCAu----- -3'
miRNA:   3'- caCGGCCGCGaACGUUuuGUcuuugu -5'
24683 3' -50 NC_005264.1 + 87750 0.66 0.996109
Target:  5'- -cGCCGGCGCcUGCc--GCAGcgccGCGa -3'
miRNA:   3'- caCGGCCGCGaACGuuuUGUCuu--UGU- -5'
24683 3' -50 NC_005264.1 + 88116 0.67 0.991698
Target:  5'- -gGCCGGCGCggUUGCGu-ACGGGcuGAUg -3'
miRNA:   3'- caCGGCCGCG--AACGUuuUGUCU--UUGu -5'
24683 3' -50 NC_005264.1 + 89715 0.68 0.978834
Target:  5'- -cGgCGGUGCUUGUuucugcacgacguAGACAGAAACu -3'
miRNA:   3'- caCgGCCGCGAACGu------------UUUGUCUUUGu -5'
24683 3' -50 NC_005264.1 + 90083 0.66 0.996109
Target:  5'- -cGCuaCGGCGCacGCGucACGGAAGCu -3'
miRNA:   3'- caCG--GCCGCGaaCGUuuUGUCUUUGu -5'
24683 3' -50 NC_005264.1 + 93402 0.66 0.995431
Target:  5'- -gGCCGGCGCg-GCuauAAGgaAGggGCAa -3'
miRNA:   3'- caCGGCCGCGaaCGu--UUUg-UCuuUGU- -5'
24683 3' -50 NC_005264.1 + 95336 0.71 0.93558
Target:  5'- -cGCCgGGCGCc-GCGAAACGGAcucGGCGg -3'
miRNA:   3'- caCGG-CCGCGaaCGUUUUGUCU---UUGU- -5'
24683 3' -50 NC_005264.1 + 96120 0.72 0.892769
Target:  5'- -cGCCGGCGCUUGUugcucccCGGcGACAc -3'
miRNA:   3'- caCGGCCGCGAACGuuuu---GUCuUUGU- -5'
24683 3' -50 NC_005264.1 + 98669 0.7 0.949958
Target:  5'- gGUGUCGGCGCUaGCuuAGaGGGAGCc -3'
miRNA:   3'- -CACGGCCGCGAaCGuuUUgUCUUUGu -5'
24683 3' -50 NC_005264.1 + 98674 0.67 0.989088
Target:  5'- aGUGCuggCGGCGCUUGCAcaccGGcCGGAucGCGg -3'
miRNA:   3'- -CACG---GCCGCGAACGU----UUuGUCUu-UGU- -5'
24683 3' -50 NC_005264.1 + 100796 0.67 0.992155
Target:  5'- -cGCUGGCGCagcaggcuccgaaccUUGCuagagcgcGACAGGGACGa -3'
miRNA:   3'- caCGGCCGCG---------------AACGuu------UUGUCUUUGU- -5'
24683 3' -50 NC_005264.1 + 105692 0.68 0.98588
Target:  5'- -cGCCGGCGCa---AAGACAGAccAGCc -3'
miRNA:   3'- caCGGCCGCGaacgUUUUGUCU--UUGu -5'
24683 3' -50 NC_005264.1 + 106778 0.68 0.979544
Target:  5'- -aGCgGGCGU--GCAGaacuguuGACAGAAACAa -3'
miRNA:   3'- caCGgCCGCGaaCGUU-------UUGUCUUUGU- -5'
24683 3' -50 NC_005264.1 + 109804 0.66 0.996532
Target:  5'- -gGCCGGggccauuuccaugaCGUgcgUGCAGGuuGCGGAGGCAg -3'
miRNA:   3'- caCGGCC--------------GCGa--ACGUUU--UGUCUUUGU- -5'
24683 3' -50 NC_005264.1 + 113261 0.67 0.989088
Target:  5'- -cGCCGGCGgCgUGCGccgagAAGguGAAGCGg -3'
miRNA:   3'- caCGGCCGC-GaACGU-----UUUguCUUUGU- -5'
24683 3' -50 NC_005264.1 + 114067 0.7 0.938645
Target:  5'- -cGCCGGC-CUUGCAcucuaugucgaacGACAGGAGCu -3'
miRNA:   3'- caCGGCCGcGAACGUu------------UUGUCUUUGu -5'
24683 3' -50 NC_005264.1 + 114994 1.1 0.008895
Target:  5'- cGUGCCGGCGCUUGCAAAACAGAAACAu -3'
miRNA:   3'- -CACGGCCGCGAACGUUUUGUCUUUGU- -5'
24683 3' -50 NC_005264.1 + 116657 0.66 0.996109
Target:  5'- -cGCCGGCGUgcucgGCGAucAGCcuAGACAc -3'
miRNA:   3'- caCGGCCGCGaa---CGUU--UUGucUUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.