miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24683 3' -50 NC_005264.1 + 162704 0.68 0.98588
Target:  5'- -cGCCGGCGUUaagGCGgccgccgggGAGCGGGAAa- -3'
miRNA:   3'- caCGGCCGCGAa--CGU---------UUUGUCUUUgu -5'
24683 3' -50 NC_005264.1 + 161398 0.72 0.899672
Target:  5'- -gGCCGGUGCUgGCucccGCGGAGGCc -3'
miRNA:   3'- caCGGCCGCGAaCGuuu-UGUCUUUGu -5'
24683 3' -50 NC_005264.1 + 160451 0.67 0.989088
Target:  5'- -gGCCGGCGCcggGCuccuGCGGGcGACGg -3'
miRNA:   3'- caCGGCCGCGaa-CGuuu-UGUCU-UUGU- -5'
24683 3' -50 NC_005264.1 + 159105 0.69 0.968839
Target:  5'- -aGCCGGCGaucGCGAGACgucggAGAAGCc -3'
miRNA:   3'- caCGGCCGCgaaCGUUUUG-----UCUUUGu -5'
24683 3' -50 NC_005264.1 + 156072 0.7 0.954231
Target:  5'- aUGCCGGCGCUgcGCGAAuACAucGAugAACAc -3'
miRNA:   3'- cACGGCCGCGAa-CGUUU-UGU--CU--UUGU- -5'
24683 3' -50 NC_005264.1 + 155788 0.68 0.984028
Target:  5'- -gGCCGGCGCcgucgccgcUUGCGc-GCAGAAuACGa -3'
miRNA:   3'- caCGGCCGCG---------AACGUuuUGUCUU-UGU- -5'
24683 3' -50 NC_005264.1 + 155728 0.68 0.97736
Target:  5'- -gGCCGGCGCUaacgGCGcGuuGGAAACc -3'
miRNA:   3'- caCGGCCGCGAa---CGUuUugUCUUUGu -5'
24683 3' -50 NC_005264.1 + 155264 0.66 0.996109
Target:  5'- -cGCagCGGCGCgggGUAGgcGGCGGGGACGa -3'
miRNA:   3'- caCG--GCCGCGaa-CGUU--UUGUCUUUGU- -5'
24683 3' -50 NC_005264.1 + 154541 0.68 0.98588
Target:  5'- cGUGCCGGCGaugGCAc-GCGGAu--- -3'
miRNA:   3'- -CACGGCCGCgaaCGUuuUGUCUuugu -5'
24683 3' -50 NC_005264.1 + 150865 0.74 0.82886
Target:  5'- cGUGCCGcGCGCg-GCAAGACAuGGGCGc -3'
miRNA:   3'- -CACGGC-CGCGaaCGUUUUGUcUUUGU- -5'
24683 3' -50 NC_005264.1 + 150779 0.69 0.971603
Target:  5'- cGUGCCagaugauauuaugGGgGCgUGUggGGCAGGAGCGc -3'
miRNA:   3'- -CACGG-------------CCgCGaACGuuUUGUCUUUGU- -5'
24683 3' -50 NC_005264.1 + 149731 0.66 0.996702
Target:  5'- uUGCUguaguGGCGCcgGCG-GGCAGAGGCGa -3'
miRNA:   3'- cACGG-----CCGCGaaCGUuUUGUCUUUGU- -5'
24683 3' -50 NC_005264.1 + 148458 0.71 0.930259
Target:  5'- -aGCCGGCGCccGCGAGGgAauGAAGCGc -3'
miRNA:   3'- caCGGCCGCGaaCGUUUUgU--CUUUGU- -5'
24683 3' -50 NC_005264.1 + 145975 0.66 0.99466
Target:  5'- -cGCCGGCGCgaauacgaacUGCGcgGCGGcuGGCGg -3'
miRNA:   3'- caCGGCCGCGa---------ACGUuuUGUCu-UUGU- -5'
24683 3' -50 NC_005264.1 + 144303 0.66 0.993787
Target:  5'- -cGCCGGCGCgcccucAGGgGGAGACGg -3'
miRNA:   3'- caCGGCCGCGaacgu-UUUgUCUUUGU- -5'
24683 3' -50 NC_005264.1 + 137983 0.68 0.984028
Target:  5'- -aGCCguGGCGgaUGcCAAGAUAGAAACc -3'
miRNA:   3'- caCGG--CCGCgaAC-GUUUUGUCUUUGu -5'
24683 3' -50 NC_005264.1 + 136371 0.67 0.991698
Target:  5'- cUGCCGGCGCgaauagcgcUGUGGAGCGauGGCGa -3'
miRNA:   3'- cACGGCCGCGa--------ACGUUUUGUcuUUGU- -5'
24683 3' -50 NC_005264.1 + 135137 0.66 0.993787
Target:  5'- uGUGCgcauugagagCGaGCGUcgGCGAGGCAGAGGCc -3'
miRNA:   3'- -CACG----------GC-CGCGaaCGUUUUGUCUUUGu -5'
24683 3' -50 NC_005264.1 + 133491 0.67 0.992802
Target:  5'- -aGCCGGCGUacccgGCAGAcgucguagccGCAGGAGg- -3'
miRNA:   3'- caCGGCCGCGaa---CGUUU----------UGUCUUUgu -5'
24683 3' -50 NC_005264.1 + 131725 0.71 0.924672
Target:  5'- uUGCUGGCGCUcuggcgcuacaaUGCGcuACGGcGACAa -3'
miRNA:   3'- cACGGCCGCGA------------ACGUuuUGUCuUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.