miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24683 3' -50 NC_005264.1 + 131009 0.69 0.968839
Target:  5'- uUGCCGcGCGCg-GCAcgGCAGAGuACGc -3'
miRNA:   3'- cACGGC-CGCGaaCGUuuUGUCUU-UGU- -5'
24683 3' -50 NC_005264.1 + 130844 0.75 0.752331
Target:  5'- -aGCuCGGCGCauaacggaGCGAAGCAGGAGCGg -3'
miRNA:   3'- caCG-GCCGCGaa------CGUUUUGUCUUUGU- -5'
24683 3' -50 NC_005264.1 + 128944 0.67 0.99158
Target:  5'- -aGgCGGCGCUaucucgcgcuaggUuCGAAGCAGAGACGc -3'
miRNA:   3'- caCgGCCGCGA-------------AcGUUUUGUCUUUGU- -5'
24683 3' -50 NC_005264.1 + 127015 0.66 0.995431
Target:  5'- cGUGCaCGGgcCGCcaUUGCGGggccGGCAGAGGCGc -3'
miRNA:   3'- -CACG-GCC--GCG--AACGUU----UUGUCUUUGU- -5'
24683 3' -50 NC_005264.1 + 126099 0.68 0.97736
Target:  5'- -gGCCGGCGCcgucGCGcuGCGGGGAa- -3'
miRNA:   3'- caCGGCCGCGaa--CGUuuUGUCUUUgu -5'
24683 3' -50 NC_005264.1 + 126027 0.67 0.987564
Target:  5'- -cGCCGcGCcucGCcUGCGccGCAGAGACAa -3'
miRNA:   3'- caCGGC-CG---CGaACGUuuUGUCUUUGU- -5'
24683 3' -50 NC_005264.1 + 125307 0.66 0.996702
Target:  5'- -cGCCuGaCGCUUGCAAGACGcc-GCAg -3'
miRNA:   3'- caCGGcC-GCGAACGUUUUGUcuuUGU- -5'
24683 3' -50 NC_005264.1 + 124987 0.68 0.98588
Target:  5'- -gGCagCGGCGCaUUcGCGGAugGGAGACGu -3'
miRNA:   3'- caCG--GCCGCG-AA-CGUUUugUCUUUGU- -5'
24683 3' -50 NC_005264.1 + 120738 0.79 0.571368
Target:  5'- gGUGCCGGCGacUGCGAcGACAGGGAUAu -3'
miRNA:   3'- -CACGGCCGCgaACGUU-UUGUCUUUGU- -5'
24683 3' -50 NC_005264.1 + 120292 0.71 0.924672
Target:  5'- cUGCCGGCGCgaagacGC---GCGGAAGCu -3'
miRNA:   3'- cACGGCCGCGaa----CGuuuUGUCUUUGu -5'
24683 3' -50 NC_005264.1 + 120198 0.66 0.993787
Target:  5'- cUGCCGGCGC--GCGAuggggguacgcAGCGGAccgGGCGu -3'
miRNA:   3'- cACGGCCGCGaaCGUU-----------UUGUCU---UUGU- -5'
24683 3' -50 NC_005264.1 + 120098 0.67 0.990463
Target:  5'- cGUGCCcaccgGGUGCcgcGCAGAAguGggGCGc -3'
miRNA:   3'- -CACGG-----CCGCGaa-CGUUUUguCuuUGU- -5'
24683 3' -50 NC_005264.1 + 119264 0.72 0.885611
Target:  5'- cGUGCCuGGCGCcacaGCGAGGCGGGccgcucGACAu -3'
miRNA:   3'- -CACGG-CCGCGaa--CGUUUUGUCU------UUGU- -5'
24683 3' -50 NC_005264.1 + 116657 0.66 0.996109
Target:  5'- -cGCCGGCGUgcucgGCGAucAGCcuAGACAc -3'
miRNA:   3'- caCGGCCGCGaa---CGUU--UUGucUUUGU- -5'
24683 3' -50 NC_005264.1 + 114994 1.1 0.008895
Target:  5'- cGUGCCGGCGCUUGCAAAACAGAAACAu -3'
miRNA:   3'- -CACGGCCGCGAACGUUUUGUCUUUGU- -5'
24683 3' -50 NC_005264.1 + 114067 0.7 0.938645
Target:  5'- -cGCCGGC-CUUGCAcucuaugucgaacGACAGGAGCu -3'
miRNA:   3'- caCGGCCGcGAACGUu------------UUGUCUUUGu -5'
24683 3' -50 NC_005264.1 + 113261 0.67 0.989088
Target:  5'- -cGCCGGCGgCgUGCGccgagAAGguGAAGCGg -3'
miRNA:   3'- caCGGCCGC-GaACGU-----UUUguCUUUGU- -5'
24683 3' -50 NC_005264.1 + 109804 0.66 0.996532
Target:  5'- -gGCCGGggccauuuccaugaCGUgcgUGCAGGuuGCGGAGGCAg -3'
miRNA:   3'- caCGGCC--------------GCGa--ACGUUU--UGUCUUUGU- -5'
24683 3' -50 NC_005264.1 + 106778 0.68 0.979544
Target:  5'- -aGCgGGCGU--GCAGaacuguuGACAGAAACAa -3'
miRNA:   3'- caCGgCCGCGaaCGUU-------UUGUCUUUGU- -5'
24683 3' -50 NC_005264.1 + 105692 0.68 0.98588
Target:  5'- -cGCCGGCGCa---AAGACAGAccAGCc -3'
miRNA:   3'- caCGGCCGCGaacgUUUUGUCU--UUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.