miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24683 3' -50 NC_005264.1 + 114994 1.1 0.008895
Target:  5'- cGUGCCGGCGCUUGCAAAACAGAAACAu -3'
miRNA:   3'- -CACGGCCGCGAACGUUUUGUCUUUGU- -5'
24683 3' -50 NC_005264.1 + 137983 0.68 0.984028
Target:  5'- -aGCCguGGCGgaUGcCAAGAUAGAAACc -3'
miRNA:   3'- caCGG--CCGCgaAC-GUUUUGUCUUUGu -5'
24683 3' -50 NC_005264.1 + 58317 0.68 0.98588
Target:  5'- -cGCCGGCuGCccGCGAAG-GGGAACAa -3'
miRNA:   3'- caCGGCCG-CGaaCGUUUUgUCUUUGU- -5'
24683 3' -50 NC_005264.1 + 66618 0.66 0.996702
Target:  5'- uUGCCGGCGCcgucGCG--GCccGAGGCAa -3'
miRNA:   3'- cACGGCCGCGaa--CGUuuUGu-CUUUGU- -5'
24683 3' -50 NC_005264.1 + 96120 0.72 0.892769
Target:  5'- -cGCCGGCGCUUGUugcucccCGGcGACAc -3'
miRNA:   3'- caCGGCCGCGAACGuuuu---GUCuUUGU- -5'
24683 3' -50 NC_005264.1 + 161398 0.72 0.899672
Target:  5'- -gGCCGGUGCUgGCucccGCGGAGGCc -3'
miRNA:   3'- caCGGCCGCGAaCGuuu-UGUCUUUGu -5'
24683 3' -50 NC_005264.1 + 4012 0.7 0.949958
Target:  5'- cUGUCGGCugacUGUAGAGCGGggGCAa -3'
miRNA:   3'- cACGGCCGcga-ACGUUUUGUCuuUGU- -5'
24683 3' -50 NC_005264.1 + 98669 0.7 0.949958
Target:  5'- gGUGUCGGCGCUaGCuuAGaGGGAGCc -3'
miRNA:   3'- -CACGGCCGCGAaCGuuUUgUCUUUGu -5'
24683 3' -50 NC_005264.1 + 126099 0.68 0.97736
Target:  5'- -gGCCGGCGCcgucGCGcuGCGGGGAa- -3'
miRNA:   3'- caCGGCCGCGaa--CGUuuUGUCUUUgu -5'
24683 3' -50 NC_005264.1 + 77971 0.68 0.984028
Target:  5'- cUGCCGGCGCcgcGCGu-ACcGGAGCGg -3'
miRNA:   3'- cACGGCCGCGaa-CGUuuUGuCUUUGU- -5'
24683 3' -50 NC_005264.1 + 89715 0.68 0.978834
Target:  5'- -cGgCGGUGCUUGUuucugcacgacguAGACAGAAACu -3'
miRNA:   3'- caCgGCCGCGAACGu------------UUUGUCUUUGu -5'
24683 3' -50 NC_005264.1 + 131009 0.69 0.968839
Target:  5'- uUGCCGcGCGCg-GCAcgGCAGAGuACGc -3'
miRNA:   3'- cACGGC-CGCGaaCGUuuUGUCUU-UGU- -5'
24683 3' -50 NC_005264.1 + 150865 0.74 0.82886
Target:  5'- cGUGCCGcGCGCg-GCAAGACAuGGGCGc -3'
miRNA:   3'- -CACGGC-CGCGaaCGUUUUGUcUUUGU- -5'
24683 3' -50 NC_005264.1 + 22742 0.68 0.979777
Target:  5'- cUGcCCGGUGCUggGCGAAGCGauAGCGg -3'
miRNA:   3'- cAC-GGCCGCGAa-CGUUUUGUcuUUGU- -5'
24683 3' -50 NC_005264.1 + 29781 0.73 0.870552
Target:  5'- cUGUCGGC-UUUGCGAGcCAGAAACAc -3'
miRNA:   3'- cACGGCCGcGAACGUUUuGUCUUUGU- -5'
24683 3' -50 NC_005264.1 + 66497 0.7 0.954231
Target:  5'- cGUGCCGGCGauggcGCGGuACAGcGAGCGu -3'
miRNA:   3'- -CACGGCCGCgaa--CGUUuUGUC-UUUGU- -5'
24683 3' -50 NC_005264.1 + 38607 0.68 0.981996
Target:  5'- aUGCCGaGCGCg-GCGAAGggguuagcCAGGAACGa -3'
miRNA:   3'- cACGGC-CGCGaaCGUUUU--------GUCUUUGU- -5'
24683 3' -50 NC_005264.1 + 155788 0.68 0.984028
Target:  5'- -gGCCGGCGCcgucgccgcUUGCGc-GCAGAAuACGa -3'
miRNA:   3'- caCGGCCGCG---------AACGUuuUGUCUU-UGU- -5'
24683 3' -50 NC_005264.1 + 119264 0.72 0.885611
Target:  5'- cGUGCCuGGCGCcacaGCGAGGCGGGccgcucGACAu -3'
miRNA:   3'- -CACGG-CCGCGaa--CGUUUUGUCU------UUGU- -5'
24683 3' -50 NC_005264.1 + 250 0.71 0.93558
Target:  5'- uGUGCggCGGCGCUggacGCG--GCAGAAGCc -3'
miRNA:   3'- -CACG--GCCGCGAa---CGUuuUGUCUUUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.