Results 21 - 40 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24683 | 3' | -50 | NC_005264.1 | + | 22742 | 0.68 | 0.979777 |
Target: 5'- cUGcCCGGUGCUggGCGAAGCGauAGCGg -3' miRNA: 3'- cAC-GGCCGCGAa-CGUUUUGUcuUUGU- -5' |
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24683 | 3' | -50 | NC_005264.1 | + | 119264 | 0.72 | 0.885611 |
Target: 5'- cGUGCCuGGCGCcacaGCGAGGCGGGccgcucGACAu -3' miRNA: 3'- -CACGG-CCGCGaa--CGUUUUGUCU------UUGU- -5' |
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24683 | 3' | -50 | NC_005264.1 | + | 127015 | 0.66 | 0.995431 |
Target: 5'- cGUGCaCGGgcCGCcaUUGCGGggccGGCAGAGGCGc -3' miRNA: 3'- -CACG-GCC--GCG--AACGUU----UUGUCUUUGU- -5' |
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24683 | 3' | -50 | NC_005264.1 | + | 136371 | 0.67 | 0.991698 |
Target: 5'- cUGCCGGCGCgaauagcgcUGUGGAGCGauGGCGa -3' miRNA: 3'- cACGGCCGCGa--------ACGUUUUGUcuUUGU- -5' |
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24683 | 3' | -50 | NC_005264.1 | + | 137983 | 0.68 | 0.984028 |
Target: 5'- -aGCCguGGCGgaUGcCAAGAUAGAAACc -3' miRNA: 3'- caCGG--CCGCgaAC-GUUUUGUCUUUGu -5' |
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24683 | 3' | -50 | NC_005264.1 | + | 29781 | 0.73 | 0.870552 |
Target: 5'- cUGUCGGC-UUUGCGAGcCAGAAACAc -3' miRNA: 3'- cACGGCCGcGAACGUUUuGUCUUUGU- -5' |
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24683 | 3' | -50 | NC_005264.1 | + | 88116 | 0.67 | 0.991698 |
Target: 5'- -gGCCGGCGCggUUGCGu-ACGGGcuGAUg -3' miRNA: 3'- caCGGCCGCG--AACGUuuUGUCU--UUGu -5' |
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24683 | 3' | -50 | NC_005264.1 | + | 150865 | 0.74 | 0.82886 |
Target: 5'- cGUGCCGcGCGCg-GCAAGACAuGGGCGc -3' miRNA: 3'- -CACGGC-CGCGaaCGUUUUGUcUUUGU- -5' |
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24683 | 3' | -50 | NC_005264.1 | + | 114994 | 1.1 | 0.008895 |
Target: 5'- cGUGCCGGCGCUUGCAAAACAGAAACAu -3' miRNA: 3'- -CACGGCCGCGAACGUUUUGUCUUUGU- -5' |
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24683 | 3' | -50 | NC_005264.1 | + | 131009 | 0.69 | 0.968839 |
Target: 5'- uUGCCGcGCGCg-GCAcgGCAGAGuACGc -3' miRNA: 3'- cACGGC-CGCGaaCGUuuUGUCUU-UGU- -5' |
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24683 | 3' | -50 | NC_005264.1 | + | 155788 | 0.68 | 0.984028 |
Target: 5'- -gGCCGGCGCcgucgccgcUUGCGc-GCAGAAuACGa -3' miRNA: 3'- caCGGCCGCG---------AACGUuuUGUCUU-UGU- -5' |
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24683 | 3' | -50 | NC_005264.1 | + | 58373 | 0.67 | 0.987564 |
Target: 5'- -gGCCGGCGCgauaUGCGccggauuguccaAGACuGGGACu -3' miRNA: 3'- caCGGCCGCGa---ACGU------------UUUGuCUUUGu -5' |
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24683 | 3' | -50 | NC_005264.1 | + | 31273 | 0.67 | 0.991698 |
Target: 5'- -cGCCaGGUGCcgcGCAcauGCAGAAGCGu -3' miRNA: 3'- caCGG-CCGCGaa-CGUuu-UGUCUUUGU- -5' |
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24683 | 3' | -50 | NC_005264.1 | + | 120198 | 0.66 | 0.993787 |
Target: 5'- cUGCCGGCGC--GCGAuggggguacgcAGCGGAccgGGCGu -3' miRNA: 3'- cACGGCCGCGaaCGUU-----------UUGUCU---UUGU- -5' |
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24683 | 3' | -50 | NC_005264.1 | + | 116657 | 0.66 | 0.996109 |
Target: 5'- -cGCCGGCGUgcucgGCGAucAGCcuAGACAc -3' miRNA: 3'- caCGGCCGCGaa---CGUU--UUGucUUUGU- -5' |
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24683 | 3' | -50 | NC_005264.1 | + | 126099 | 0.68 | 0.97736 |
Target: 5'- -gGCCGGCGCcgucGCGcuGCGGGGAa- -3' miRNA: 3'- caCGGCCGCGaa--CGUuuUGUCUUUgu -5' |
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24683 | 3' | -50 | NC_005264.1 | + | 96120 | 0.72 | 0.892769 |
Target: 5'- -cGCCGGCGCUUGUugcucccCGGcGACAc -3' miRNA: 3'- caCGGCCGCGAACGuuuu---GUCuUUGU- -5' |
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24683 | 3' | -50 | NC_005264.1 | + | 4012 | 0.7 | 0.949958 |
Target: 5'- cUGUCGGCugacUGUAGAGCGGggGCAa -3' miRNA: 3'- cACGGCCGcga-ACGUUUUGUCuuUGU- -5' |
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24683 | 3' | -50 | NC_005264.1 | + | 36702 | 0.68 | 0.97736 |
Target: 5'- -gGCCGGCGCUaacgGCGcGuuGGAAACc -3' miRNA: 3'- caCGGCCGCGAa---CGUuUugUCUUUGu -5' |
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24683 | 3' | -50 | NC_005264.1 | + | 144303 | 0.66 | 0.993787 |
Target: 5'- -cGCCGGCGCgcccucAGGgGGAGACGg -3' miRNA: 3'- caCGGCCGCGaacgu-UUUgUCUUUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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