miRNA display CGI


Results 41 - 60 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24683 3' -50 NC_005264.1 + 31839 0.74 0.82886
Target:  5'- cGUGCCGcGCGCg-GCAAGACAuGGGCGc -3'
miRNA:   3'- -CACGGC-CGCGaaCGUUUUGUcUUUGU- -5'
24683 3' -50 NC_005264.1 + 130844 0.75 0.752331
Target:  5'- -aGCuCGGCGCauaacggaGCGAAGCAGGAGCGg -3'
miRNA:   3'- caCG-GCCGCGaa------CGUUUUGUCUUUGU- -5'
24683 3' -50 NC_005264.1 + 7072 0.68 0.97736
Target:  5'- -gGCCGGCGCcgucGCGcuGCGGGGAa- -3'
miRNA:   3'- caCGGCCGCGaa--CGUuuUGUCUUUgu -5'
24683 3' -50 NC_005264.1 + 120738 0.79 0.571368
Target:  5'- gGUGCCGGCGacUGCGAcGACAGGGAUAu -3'
miRNA:   3'- -CACGGCCGCgaACGUU-UUGUCUUUGU- -5'
24683 3' -50 NC_005264.1 + 66737 0.68 0.98588
Target:  5'- -cGCCGGCGCcuaaaccgcgGCAAcaguagccgcAACGGAuACAg -3'
miRNA:   3'- caCGGCCGCGaa--------CGUU----------UUGUCUuUGU- -5'
24683 3' -50 NC_005264.1 + 68781 0.68 0.979777
Target:  5'- uUGCCGGCGCcaaaGCGAAAgUAGucAAACAu -3'
miRNA:   3'- cACGGCCGCGaa--CGUUUU-GUC--UUUGU- -5'
24683 3' -50 NC_005264.1 + 36762 0.68 0.984028
Target:  5'- -gGCCGGCGCcgucgccgcUUGCGc-GCAGAAuACGa -3'
miRNA:   3'- caCGGCCGCG---------AACGUuuUGUCUU-UGU- -5'
24683 3' -50 NC_005264.1 + 24954 0.66 0.996646
Target:  5'- uGUGCCguaccagGGCGCU-GCGccGAAuCGGAAACu -3'
miRNA:   3'- -CACGG-------CCGCGAaCGU--UUU-GUCUUUGu -5'
24683 3' -50 NC_005264.1 + 42371 0.72 0.899672
Target:  5'- -gGCCGGUGCUgGCucccGCGGAGGCc -3'
miRNA:   3'- caCGGCCGCGAaCGuuu-UGUCUUUGu -5'
24683 3' -50 NC_005264.1 + 120292 0.71 0.924672
Target:  5'- cUGCCGGCGCgaagacGC---GCGGAAGCu -3'
miRNA:   3'- cACGGCCGCGaa----CGuuuUGUCUUUGu -5'
24683 3' -50 NC_005264.1 + 144303 0.66 0.993787
Target:  5'- -cGCCGGCGCgcccucAGGgGGAGACGg -3'
miRNA:   3'- caCGGCCGCGaacgu-UUUgUCUUUGU- -5'
24683 3' -50 NC_005264.1 + 154541 0.68 0.98588
Target:  5'- cGUGCCGGCGaugGCAc-GCGGAu--- -3'
miRNA:   3'- -CACGGCCGCgaaCGUuuUGUCUuugu -5'
24683 3' -50 NC_005264.1 + 145975 0.66 0.99466
Target:  5'- -cGCCGGCGCgaauacgaacUGCGcgGCGGcuGGCGg -3'
miRNA:   3'- caCGGCCGCGa---------ACGUuuUGUCu-UUGU- -5'
24683 3' -50 NC_005264.1 + 93402 0.66 0.995431
Target:  5'- -gGCCGGCGCg-GCuauAAGgaAGggGCAa -3'
miRNA:   3'- caCGGCCGCGaaCGu--UUUg-UCuuUGU- -5'
24683 3' -50 NC_005264.1 + 5961 0.66 0.995431
Target:  5'- -gGCagCGGCGCaUUcGCGGAugGGAGACu -3'
miRNA:   3'- caCG--GCCGCG-AA-CGUUUugUCUUUGu -5'
24683 3' -50 NC_005264.1 + 36702 0.68 0.97736
Target:  5'- -gGCCGGCGCUaacgGCGcGuuGGAAACc -3'
miRNA:   3'- caCGGCCGCGAa---CGUuUugUCUUUGu -5'
24683 3' -50 NC_005264.1 + 106778 0.68 0.979544
Target:  5'- -aGCgGGCGU--GCAGaacuguuGACAGAAACAa -3'
miRNA:   3'- caCGgCCGCGaaCGUU-------UUGUCUUUGU- -5'
24683 3' -50 NC_005264.1 + 79993 0.66 0.996109
Target:  5'- aUGCCGGcCGC--GCGGAAgaGGAGGCGc -3'
miRNA:   3'- cACGGCC-GCGaaCGUUUUg-UCUUUGU- -5'
24683 3' -50 NC_005264.1 + 90083 0.66 0.996109
Target:  5'- -cGCuaCGGCGCacGCGucACGGAAGCu -3'
miRNA:   3'- caCG--GCCGCGaaCGUuuUGUCUUUGu -5'
24683 3' -50 NC_005264.1 + 131725 0.71 0.924672
Target:  5'- uUGCUGGCGCUcuggcgcuacaaUGCGcuACGGcGACAa -3'
miRNA:   3'- cACGGCCGCGA------------ACGUuuUGUCuUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.