miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24683 5' -57.1 NC_005264.1 + 93539 0.66 0.888734
Target:  5'- --gUUCUGCGUUUUA-GCGCCCaucagaguccacaggGGCg -3'
miRNA:   3'- gagAAGACGCGGAAUaCGCGGGg--------------CCG- -5'
24683 5' -57.1 NC_005264.1 + 138603 0.66 0.888059
Target:  5'- -aCUUCgGCGCCggagUGUcuuacuaucccgGCGCgCUGGCu -3'
miRNA:   3'- gaGAAGaCGCGGa---AUA------------CGCGgGGCCG- -5'
24683 5' -57.1 NC_005264.1 + 114765 0.66 0.888059
Target:  5'- uUCUUgccCUGCGCCgcucggccgAUGU-CCCUGGCc -3'
miRNA:   3'- gAGAA---GACGCGGaa-------UACGcGGGGCCG- -5'
24683 5' -57.1 NC_005264.1 + 18987 0.66 0.886019
Target:  5'- gUCUUCgUGCGCCUUcauggGCGUaCCCaaacaagauaagcgGGCg -3'
miRNA:   3'- gAGAAG-ACGCGGAAua---CGCG-GGG--------------CCG- -5'
24683 5' -57.1 NC_005264.1 + 61477 0.66 0.881182
Target:  5'- uUCgUUCUagcGCGCCgac-GCGCCCC-GCg -3'
miRNA:   3'- gAG-AAGA---CGCGGaauaCGCGGGGcCG- -5'
24683 5' -57.1 NC_005264.1 + 79723 0.66 0.881182
Target:  5'- ---cUCcGCgGCCUUG-GCGCCCguCGGCg -3'
miRNA:   3'- gagaAGaCG-CGGAAUaCGCGGG--GCCG- -5'
24683 5' -57.1 NC_005264.1 + 103115 0.66 0.881182
Target:  5'- aCUCUUCUaacgaGCC--AUGCGCgCCGGa -3'
miRNA:   3'- -GAGAAGAcg---CGGaaUACGCGgGGCCg -5'
24683 5' -57.1 NC_005264.1 + 68273 0.66 0.881182
Target:  5'- -gCUgCUGcCGCCUcuuUGCGUCCCcagcGGCa -3'
miRNA:   3'- gaGAaGAC-GCGGAau-ACGCGGGG----CCG- -5'
24683 5' -57.1 NC_005264.1 + 98059 0.66 0.881182
Target:  5'- aCUCguucCUGaauaaguguUGCaugGUGUGCCCCGGCc -3'
miRNA:   3'- -GAGaa--GAC---------GCGgaaUACGCGGGGCCG- -5'
24683 5' -57.1 NC_005264.1 + 41723 0.66 0.881182
Target:  5'- aUCUUCUcGCGCCag--GCGgCagCGGCg -3'
miRNA:   3'- gAGAAGA-CGCGGaauaCGCgGg-GCCG- -5'
24683 5' -57.1 NC_005264.1 + 146337 0.66 0.881182
Target:  5'- aUCcgUCUGCGCCggc-GUGCCUCGa- -3'
miRNA:   3'- gAGa-AGACGCGGaauaCGCGGGGCcg -5'
24683 5' -57.1 NC_005264.1 + 64787 0.66 0.874087
Target:  5'- ---aUCUGCGCgca--GCGCCCCcaugGGCa -3'
miRNA:   3'- gagaAGACGCGgaauaCGCGGGG----CCG- -5'
24683 5' -57.1 NC_005264.1 + 33488 0.66 0.874087
Target:  5'- cCUCgUUCcGCGCUUgcucaGUGCGCgucgcugcgCCCGGUa -3'
miRNA:   3'- -GAG-AAGaCGCGGAa----UACGCG---------GGGCCG- -5'
24683 5' -57.1 NC_005264.1 + 152515 0.66 0.874087
Target:  5'- cCUCgUUCcGCGCUUgcucaGUGCGCgucgcugcgCCCGGUa -3'
miRNA:   3'- -GAG-AAGaCGCGGAa----UACGCG---------GGGCCG- -5'
24683 5' -57.1 NC_005264.1 + 41021 0.66 0.873366
Target:  5'- uUCgccgCUGUGCCUUccacGUGCCCCuccuaacguauugGGCg -3'
miRNA:   3'- gAGaa--GACGCGGAAua--CGCGGGG-------------CCG- -5'
24683 5' -57.1 NC_005264.1 + 84014 0.66 0.872643
Target:  5'- -gCUUCUGCGCCggacaagaagaAUGCGCCgacuaaCGcGCu -3'
miRNA:   3'- gaGAAGACGCGGaa---------UACGCGGg-----GC-CG- -5'
24683 5' -57.1 NC_005264.1 + 131733 0.66 0.86678
Target:  5'- gCUCUg--GCGCUacaAUGCGCUaCGGCg -3'
miRNA:   3'- -GAGAagaCGCGGaa-UACGCGGgGCCG- -5'
24683 5' -57.1 NC_005264.1 + 160321 0.66 0.859264
Target:  5'- gUgUUCUGCGCacccUGUaccuCCCCGGCa -3'
miRNA:   3'- gAgAAGACGCGgaauACGc---GGGGCCG- -5'
24683 5' -57.1 NC_005264.1 + 125577 0.66 0.859264
Target:  5'- -gCUUCggcaggaGCGCCUcguccacggugAUGCGCCCCccaggGGCc -3'
miRNA:   3'- gaGAAGa------CGCGGAa----------UACGCGGGG-----CCG- -5'
24683 5' -57.1 NC_005264.1 + 6550 0.66 0.859264
Target:  5'- -gCUUCggcaggaGCGCCUcguccacggugAUGCGCCCCccaggGGCc -3'
miRNA:   3'- gaGAAGa------CGCGGAa----------UACGCGGGG-----CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.