Results 21 - 40 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24683 | 5' | -57.1 | NC_005264.1 | + | 1514 | 0.66 | 0.851547 |
Target: 5'- -gCUggCUGCGCCguuuuuugGgGCCCCgcGGCg -3' miRNA: 3'- gaGAa-GACGCGGaaua----CgCGGGG--CCG- -5' |
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24683 | 5' | -57.1 | NC_005264.1 | + | 98059 | 0.66 | 0.881182 |
Target: 5'- aCUCguucCUGaauaaguguUGCaugGUGUGCCCCGGCc -3' miRNA: 3'- -GAGaa--GAC---------GCGgaaUACGCGGGGCCG- -5' |
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24683 | 5' | -57.1 | NC_005264.1 | + | 42726 | 0.67 | 0.827247 |
Target: 5'- gCUCg-CUGCGCCccacuucUGCGCggcaCCCGGUg -3' miRNA: 3'- -GAGaaGACGCGGaau----ACGCG----GGGCCG- -5' |
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24683 | 5' | -57.1 | NC_005264.1 | + | 78631 | 0.67 | 0.827247 |
Target: 5'- cCUCUUCUGUuaaccGCCgcg-GCGgCCCUGuGCc -3' miRNA: 3'- -GAGAAGACG-----CGGaauaCGC-GGGGC-CG- -5' |
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24683 | 5' | -57.1 | NC_005264.1 | + | 75085 | 0.67 | 0.827247 |
Target: 5'- uUCUUCgcgGCGCUgcg-GCagGCgCCGGCg -3' miRNA: 3'- gAGAAGa--CGCGGaauaCG--CGgGGCCG- -5' |
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24683 | 5' | -57.1 | NC_005264.1 | + | 25401 | 0.67 | 0.835532 |
Target: 5'- uUCUaUCUGCGCagcuauCUcGUGCGCCa-GGCg -3' miRNA: 3'- gAGA-AGACGCG------GAaUACGCGGggCCG- -5' |
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24683 | 5' | -57.1 | NC_005264.1 | + | 55328 | 0.67 | 0.827247 |
Target: 5'- aCUUUUCacgUGCGCgUUGU-CGCUCgCGGCg -3' miRNA: 3'- -GAGAAG---ACGCGgAAUAcGCGGG-GCCG- -5' |
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24683 | 5' | -57.1 | NC_005264.1 | + | 97294 | 0.67 | 0.827247 |
Target: 5'- aCUCUUg-GUGCgaUGgcaacuagaggGCGCCCCGGUg -3' miRNA: 3'- -GAGAAgaCGCGgaAUa----------CGCGGGGCCG- -5' |
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24683 | 5' | -57.1 | NC_005264.1 | + | 137963 | 0.67 | 0.843634 |
Target: 5'- ------aGCgaaGCCUcGUGcCGCCCCGGCu -3' miRNA: 3'- gagaagaCG---CGGAaUAC-GCGGGGCCG- -5' |
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24683 | 5' | -57.1 | NC_005264.1 | + | 40054 | 0.67 | 0.843634 |
Target: 5'- ------aGgGCCcgcaGCGCCCCGGCg -3' miRNA: 3'- gagaagaCgCGGaauaCGCGGGGCCG- -5' |
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24683 | 5' | -57.1 | NC_005264.1 | + | 135386 | 0.67 | 0.835532 |
Target: 5'- cCUUUgCUGCGCCgcucgGCGCagguCUGGCu -3' miRNA: 3'- -GAGAaGACGCGGaaua-CGCGg---GGCCG- -5' |
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24683 | 5' | -57.1 | NC_005264.1 | + | 126845 | 0.67 | 0.827247 |
Target: 5'- cCUCgucgCUGCGCgUUucgcucuccGCGCCCCcuccaGGCg -3' miRNA: 3'- -GAGaa--GACGCGgAAua-------CGCGGGG-----CCG- -5' |
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24683 | 5' | -57.1 | NC_005264.1 | + | 71774 | 0.67 | 0.825569 |
Target: 5'- -cCUgCUgGCGCCguugcagaaGCGCCUCGGCu -3' miRNA: 3'- gaGAaGA-CGCGGaaua-----CGCGGGGCCG- -5' |
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24683 | 5' | -57.1 | NC_005264.1 | + | 80840 | 0.67 | 0.810162 |
Target: 5'- aUC-UCUGCgGCCUUAcGCGUUCUGGa -3' miRNA: 3'- gAGaAGACG-CGGAAUaCGCGGGGCCg -5' |
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24683 | 5' | -57.1 | NC_005264.1 | + | 8254 | 0.67 | 0.835532 |
Target: 5'- ---gUCUG-GCCagcgGCGCCCUGGUg -3' miRNA: 3'- gagaAGACgCGGaauaCGCGGGGCCG- -5' |
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24683 | 5' | -57.1 | NC_005264.1 | + | 159081 | 0.67 | 0.843634 |
Target: 5'- ------aGgGCCcgcaGCGCCCCGGCg -3' miRNA: 3'- gagaagaCgCGGaauaCGCGGGGCCG- -5' |
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24683 | 5' | -57.1 | NC_005264.1 | + | 90684 | 0.68 | 0.792442 |
Target: 5'- aUCgagUCUaGCGCCUUGaGCGCCagcaucaugCCGGa -3' miRNA: 3'- gAGa--AGA-CGCGGAAUaCGCGG---------GGCCg -5' |
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24683 | 5' | -57.1 | NC_005264.1 | + | 159956 | 0.68 | 0.755363 |
Target: 5'- cCUCcccgCcGCGCC----GCGCCCCGGUc -3' miRNA: 3'- -GAGaa--GaCGCGGaauaCGCGGGGCCG- -5' |
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24683 | 5' | -57.1 | NC_005264.1 | + | 59701 | 0.68 | 0.755363 |
Target: 5'- ---cUUUGCGCCgc--GCGCCgcgCCGGCg -3' miRNA: 3'- gagaAGACGCGGaauaCGCGG---GGCCG- -5' |
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24683 | 5' | -57.1 | NC_005264.1 | + | 71428 | 0.68 | 0.764816 |
Target: 5'- ----aCUcCGCCg---GUGCCCCGGCg -3' miRNA: 3'- gagaaGAcGCGGaauaCGCGGGGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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