Results 1 - 20 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24683 | 5' | -57.1 | NC_005264.1 | + | 115028 | 1.12 | 0.001457 |
Target: 5'- gCUCUUCUGCGCCUUAUGCGCCCCGGCg -3' miRNA: 3'- -GAGAAGACGCGGAAUACGCGGGGCCG- -5' |
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24683 | 5' | -57.1 | NC_005264.1 | + | 86640 | 0.75 | 0.381103 |
Target: 5'- cCUCUUCUGCGUUgg--GCGCCgCGGg -3' miRNA: 3'- -GAGAAGACGCGGaauaCGCGGgGCCg -5' |
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24683 | 5' | -57.1 | NC_005264.1 | + | 44759 | 0.74 | 0.44127 |
Target: 5'- -aCUUCgUGCGCCcaaagGUGCCCgCGGCg -3' miRNA: 3'- gaGAAG-ACGCGGaaua-CGCGGG-GCCG- -5' |
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24683 | 5' | -57.1 | NC_005264.1 | + | 146267 | 0.73 | 0.506464 |
Target: 5'- gUCaUgUGCGCCgc---CGCCCCGGCg -3' miRNA: 3'- gAGaAgACGCGGaauacGCGGGGCCG- -5' |
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24683 | 5' | -57.1 | NC_005264.1 | + | 46773 | 0.73 | 0.487386 |
Target: 5'- aUCUUCgcuuggGCGCgUUAcUGCGCCCC-GCa -3' miRNA: 3'- gAGAAGa-----CGCGgAAU-ACGCGGGGcCG- -5' |
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24683 | 5' | -57.1 | NC_005264.1 | + | 148147 | 0.73 | 0.496884 |
Target: 5'- gCUCUgcUCgcgaaGgGCCaagUAUGgGCCCCGGCa -3' miRNA: 3'- -GAGA--AGa----CgCGGa--AUACgCGGGGCCG- -5' |
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24683 | 5' | -57.1 | NC_005264.1 | + | 146714 | 0.72 | 0.534671 |
Target: 5'- uUCUUCUGUGCCUgAUGaGCggggcagaaagaaCCCGGCc -3' miRNA: 3'- gAGAAGACGCGGAaUACgCG-------------GGGCCG- -5' |
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24683 | 5' | -57.1 | NC_005264.1 | + | 85053 | 0.72 | 0.525854 |
Target: 5'- ---gUCUGCGCCgcgGUGCGUCUcugCGGCc -3' miRNA: 3'- gagaAGACGCGGaa-UACGCGGG---GCCG- -5' |
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24683 | 5' | -57.1 | NC_005264.1 | + | 30370 | 0.71 | 0.605697 |
Target: 5'- -cCUUCgGCGCCgccgcgucGCGUCUCGGCg -3' miRNA: 3'- gaGAAGaCGCGGaaua----CGCGGGGCCG- -5' |
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24683 | 5' | -57.1 | NC_005264.1 | + | 26351 | 0.71 | 0.625984 |
Target: 5'- ----cCUuaGUCUUGUGCGCCgCGGCa -3' miRNA: 3'- gagaaGAcgCGGAAUACGCGGgGCCG- -5' |
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24683 | 5' | -57.1 | NC_005264.1 | + | 149397 | 0.71 | 0.605697 |
Target: 5'- -cCUUCgGCGCCgccgcgucGCGUCUCGGCg -3' miRNA: 3'- gaGAAGaCGCGGaaua----CGCGGGGCCG- -5' |
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24683 | 5' | -57.1 | NC_005264.1 | + | 143735 | 0.7 | 0.686702 |
Target: 5'- gCUCgUCUccGCGCCgccgcgGUGCaGUCCUGGCu -3' miRNA: 3'- -GAGaAGA--CGCGGaa----UACG-CGGGGCCG- -5' |
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24683 | 5' | -57.1 | NC_005264.1 | + | 104066 | 0.7 | 0.664528 |
Target: 5'- aUCcUCUGCGCCgaccaccgcgcGUGCGCCUcugauagcgcagCGGCg -3' miRNA: 3'- gAGaAGACGCGGaa---------UACGCGGG------------GCCG- -5' |
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24683 | 5' | -57.1 | NC_005264.1 | + | 58672 | 0.7 | 0.66655 |
Target: 5'- uUCUcCgGCGCUgcagGCGCaCCCGGCc -3' miRNA: 3'- gAGAaGaCGCGGaauaCGCG-GGGCCG- -5' |
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24683 | 5' | -57.1 | NC_005264.1 | + | 96292 | 0.69 | 0.696715 |
Target: 5'- ------cGCGCUc-GUGCGCCUCGGCg -3' miRNA: 3'- gagaagaCGCGGaaUACGCGGGGCCG- -5' |
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24683 | 5' | -57.1 | NC_005264.1 | + | 146002 | 0.69 | 0.706675 |
Target: 5'- cCUCUacggCgUGCGCgUUAUGgGCUCgGGCg -3' miRNA: 3'- -GAGAa---G-ACGCGgAAUACgCGGGgCCG- -5' |
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24683 | 5' | -57.1 | NC_005264.1 | + | 75701 | 0.69 | 0.716572 |
Target: 5'- gUCUUUcgGCGCgaagaCUgGUGCGCCCCgcgGGCg -3' miRNA: 3'- gAGAAGa-CGCG-----GAaUACGCGGGG---CCG- -5' |
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24683 | 5' | -57.1 | NC_005264.1 | + | 8323 | 0.69 | 0.726399 |
Target: 5'- gCUUgUUUGCGCgCggcaUGUGCGCCCC-GCa -3' miRNA: 3'- -GAGaAGACGCG-Ga---AUACGCGGGGcCG- -5' |
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24683 | 5' | -57.1 | NC_005264.1 | + | 74670 | 0.69 | 0.706675 |
Target: 5'- gCUCUugagCUgGUGCgUUA-GCGCCaCCGGCg -3' miRNA: 3'- -GAGAa---GA-CGCGgAAUaCGCGG-GGCCG- -5' |
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24683 | 5' | -57.1 | NC_005264.1 | + | 40929 | 0.68 | 0.755363 |
Target: 5'- cCUCcccgCcGCGCC----GCGCCCCGGUc -3' miRNA: 3'- -GAGaa--GaCGCGGaauaCGCGGGGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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