miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24683 5' -57.1 NC_005264.1 + 115028 1.12 0.001457
Target:  5'- gCUCUUCUGCGCCUUAUGCGCCCCGGCg -3'
miRNA:   3'- -GAGAAGACGCGGAAUACGCGGGGCCG- -5'
24683 5' -57.1 NC_005264.1 + 86640 0.75 0.381103
Target:  5'- cCUCUUCUGCGUUgg--GCGCCgCGGg -3'
miRNA:   3'- -GAGAAGACGCGGaauaCGCGGgGCCg -5'
24683 5' -57.1 NC_005264.1 + 44759 0.74 0.44127
Target:  5'- -aCUUCgUGCGCCcaaagGUGCCCgCGGCg -3'
miRNA:   3'- gaGAAG-ACGCGGaaua-CGCGGG-GCCG- -5'
24683 5' -57.1 NC_005264.1 + 46773 0.73 0.487386
Target:  5'- aUCUUCgcuuggGCGCgUUAcUGCGCCCC-GCa -3'
miRNA:   3'- gAGAAGa-----CGCGgAAU-ACGCGGGGcCG- -5'
24683 5' -57.1 NC_005264.1 + 148147 0.73 0.496884
Target:  5'- gCUCUgcUCgcgaaGgGCCaagUAUGgGCCCCGGCa -3'
miRNA:   3'- -GAGA--AGa----CgCGGa--AUACgCGGGGCCG- -5'
24683 5' -57.1 NC_005264.1 + 146267 0.73 0.506464
Target:  5'- gUCaUgUGCGCCgc---CGCCCCGGCg -3'
miRNA:   3'- gAGaAgACGCGGaauacGCGGGGCCG- -5'
24683 5' -57.1 NC_005264.1 + 85053 0.72 0.525854
Target:  5'- ---gUCUGCGCCgcgGUGCGUCUcugCGGCc -3'
miRNA:   3'- gagaAGACGCGGaa-UACGCGGG---GCCG- -5'
24683 5' -57.1 NC_005264.1 + 146714 0.72 0.534671
Target:  5'- uUCUUCUGUGCCUgAUGaGCggggcagaaagaaCCCGGCc -3'
miRNA:   3'- gAGAAGACGCGGAaUACgCG-------------GGGCCG- -5'
24683 5' -57.1 NC_005264.1 + 30370 0.71 0.605697
Target:  5'- -cCUUCgGCGCCgccgcgucGCGUCUCGGCg -3'
miRNA:   3'- gaGAAGaCGCGGaaua----CGCGGGGCCG- -5'
24683 5' -57.1 NC_005264.1 + 149397 0.71 0.605697
Target:  5'- -cCUUCgGCGCCgccgcgucGCGUCUCGGCg -3'
miRNA:   3'- gaGAAGaCGCGGaaua----CGCGGGGCCG- -5'
24683 5' -57.1 NC_005264.1 + 26351 0.71 0.625984
Target:  5'- ----cCUuaGUCUUGUGCGCCgCGGCa -3'
miRNA:   3'- gagaaGAcgCGGAAUACGCGGgGCCG- -5'
24683 5' -57.1 NC_005264.1 + 104066 0.7 0.664528
Target:  5'- aUCcUCUGCGCCgaccaccgcgcGUGCGCCUcugauagcgcagCGGCg -3'
miRNA:   3'- gAGaAGACGCGGaa---------UACGCGGG------------GCCG- -5'
24683 5' -57.1 NC_005264.1 + 58672 0.7 0.66655
Target:  5'- uUCUcCgGCGCUgcagGCGCaCCCGGCc -3'
miRNA:   3'- gAGAaGaCGCGGaauaCGCG-GGGCCG- -5'
24683 5' -57.1 NC_005264.1 + 143735 0.7 0.686702
Target:  5'- gCUCgUCUccGCGCCgccgcgGUGCaGUCCUGGCu -3'
miRNA:   3'- -GAGaAGA--CGCGGaa----UACG-CGGGGCCG- -5'
24683 5' -57.1 NC_005264.1 + 96292 0.69 0.696715
Target:  5'- ------cGCGCUc-GUGCGCCUCGGCg -3'
miRNA:   3'- gagaagaCGCGGaaUACGCGGGGCCG- -5'
24683 5' -57.1 NC_005264.1 + 146002 0.69 0.706675
Target:  5'- cCUCUacggCgUGCGCgUUAUGgGCUCgGGCg -3'
miRNA:   3'- -GAGAa---G-ACGCGgAAUACgCGGGgCCG- -5'
24683 5' -57.1 NC_005264.1 + 74670 0.69 0.706675
Target:  5'- gCUCUugagCUgGUGCgUUA-GCGCCaCCGGCg -3'
miRNA:   3'- -GAGAa---GA-CGCGgAAUaCGCGG-GGCCG- -5'
24683 5' -57.1 NC_005264.1 + 75701 0.69 0.716572
Target:  5'- gUCUUUcgGCGCgaagaCUgGUGCGCCCCgcgGGCg -3'
miRNA:   3'- gAGAAGa-CGCG-----GAaUACGCGGGG---CCG- -5'
24683 5' -57.1 NC_005264.1 + 8323 0.69 0.726399
Target:  5'- gCUUgUUUGCGCgCggcaUGUGCGCCCC-GCa -3'
miRNA:   3'- -GAGaAGACGCG-Ga---AUACGCGGGGcCG- -5'
24683 5' -57.1 NC_005264.1 + 40929 0.68 0.755363
Target:  5'- cCUCcccgCcGCGCC----GCGCCCCGGUc -3'
miRNA:   3'- -GAGaa--GaCGCGGaauaCGCGGGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.