miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24683 5' -57.1 NC_005264.1 + 1514 0.66 0.851547
Target:  5'- -gCUggCUGCGCCguuuuuugGgGCCCCgcGGCg -3'
miRNA:   3'- gaGAa-GACGCGGaaua----CgCGGGG--CCG- -5'
24683 5' -57.1 NC_005264.1 + 120541 0.66 0.851547
Target:  5'- -gCUggCUGCGCCguuuuuugGgGCCCCgcGGCg -3'
miRNA:   3'- gaGAa-GACGCGGaaua----CgCGGGG--CCG- -5'
24683 5' -57.1 NC_005264.1 + 159081 0.67 0.843634
Target:  5'- ------aGgGCCcgcaGCGCCCCGGCg -3'
miRNA:   3'- gagaagaCgCGGaauaCGCGGGGCCG- -5'
24683 5' -57.1 NC_005264.1 + 40054 0.67 0.843634
Target:  5'- ------aGgGCCcgcaGCGCCCCGGCg -3'
miRNA:   3'- gagaagaCgCGGaauaCGCGGGGCCG- -5'
24683 5' -57.1 NC_005264.1 + 137963 0.67 0.843634
Target:  5'- ------aGCgaaGCCUcGUGcCGCCCCGGCu -3'
miRNA:   3'- gagaagaCG---CGGAaUAC-GCGGGGCCG- -5'
24683 5' -57.1 NC_005264.1 + 25401 0.67 0.835532
Target:  5'- uUCUaUCUGCGCagcuauCUcGUGCGCCa-GGCg -3'
miRNA:   3'- gAGA-AGACGCG------GAaUACGCGGggCCG- -5'
24683 5' -57.1 NC_005264.1 + 8254 0.67 0.835532
Target:  5'- ---gUCUG-GCCagcgGCGCCCUGGUg -3'
miRNA:   3'- gagaAGACgCGGaauaCGCGGGGCCG- -5'
24683 5' -57.1 NC_005264.1 + 135386 0.67 0.835532
Target:  5'- cCUUUgCUGCGCCgcucgGCGCagguCUGGCu -3'
miRNA:   3'- -GAGAaGACGCGGaaua-CGCGg---GGCCG- -5'
24683 5' -57.1 NC_005264.1 + 42726 0.67 0.827247
Target:  5'- gCUCg-CUGCGCCccacuucUGCGCggcaCCCGGUg -3'
miRNA:   3'- -GAGaaGACGCGGaau----ACGCG----GGGCCG- -5'
24683 5' -57.1 NC_005264.1 + 55328 0.67 0.827247
Target:  5'- aCUUUUCacgUGCGCgUUGU-CGCUCgCGGCg -3'
miRNA:   3'- -GAGAAG---ACGCGgAAUAcGCGGG-GCCG- -5'
24683 5' -57.1 NC_005264.1 + 97294 0.67 0.827247
Target:  5'- aCUCUUg-GUGCgaUGgcaacuagaggGCGCCCCGGUg -3'
miRNA:   3'- -GAGAAgaCGCGgaAUa----------CGCGGGGCCG- -5'
24683 5' -57.1 NC_005264.1 + 75085 0.67 0.827247
Target:  5'- uUCUUCgcgGCGCUgcg-GCagGCgCCGGCg -3'
miRNA:   3'- gAGAAGa--CGCGGaauaCG--CGgGGCCG- -5'
24683 5' -57.1 NC_005264.1 + 78631 0.67 0.827247
Target:  5'- cCUCUUCUGUuaaccGCCgcg-GCGgCCCUGuGCc -3'
miRNA:   3'- -GAGAAGACG-----CGGaauaCGC-GGGGC-CG- -5'
24683 5' -57.1 NC_005264.1 + 126845 0.67 0.827247
Target:  5'- cCUCgucgCUGCGCgUUucgcucuccGCGCCCCcuccaGGCg -3'
miRNA:   3'- -GAGaa--GACGCGgAAua-------CGCGGGG-----CCG- -5'
24683 5' -57.1 NC_005264.1 + 71774 0.67 0.825569
Target:  5'- -cCUgCUgGCGCCguugcagaaGCGCCUCGGCu -3'
miRNA:   3'- gaGAaGA-CGCGGaaua-----CGCGGGGCCG- -5'
24683 5' -57.1 NC_005264.1 + 80840 0.67 0.810162
Target:  5'- aUC-UCUGCgGCCUUAcGCGUUCUGGa -3'
miRNA:   3'- gAGaAGACG-CGGAAUaCGCGGGGCCg -5'
24683 5' -57.1 NC_005264.1 + 90684 0.68 0.792442
Target:  5'- aUCgagUCUaGCGCCUUGaGCGCCagcaucaugCCGGa -3'
miRNA:   3'- gAGa--AGA-CGCGGAAUaCGCGG---------GGCCg -5'
24683 5' -57.1 NC_005264.1 + 22150 0.68 0.792442
Target:  5'- ------cGCGCCUUAgauUGCGCCgCgGGCc -3'
miRNA:   3'- gagaagaCGCGGAAU---ACGCGG-GgCCG- -5'
24683 5' -57.1 NC_005264.1 + 29583 0.68 0.783364
Target:  5'- gUCg-CUGCGuCCUUugucuUGCGCgUCGGCg -3'
miRNA:   3'- gAGaaGACGC-GGAAu----ACGCGgGGCCG- -5'
24683 5' -57.1 NC_005264.1 + 71428 0.68 0.764816
Target:  5'- ----aCUcCGCCg---GUGCCCCGGCg -3'
miRNA:   3'- gagaaGAcGCGGaauaCGCGGGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.