miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24683 5' -57.1 NC_005264.1 + 1514 0.66 0.851547
Target:  5'- -gCUggCUGCGCCguuuuuugGgGCCCCgcGGCg -3'
miRNA:   3'- gaGAa-GACGCGGaaua----CgCGGGG--CCG- -5'
24683 5' -57.1 NC_005264.1 + 6550 0.66 0.859264
Target:  5'- -gCUUCggcaggaGCGCCUcguccacggugAUGCGCCCCccaggGGCc -3'
miRNA:   3'- gaGAAGa------CGCGGAa----------UACGCGGGG-----CCG- -5'
24683 5' -57.1 NC_005264.1 + 8254 0.67 0.835532
Target:  5'- ---gUCUG-GCCagcgGCGCCCUGGUg -3'
miRNA:   3'- gagaAGACgCGGaauaCGCGGGGCCG- -5'
24683 5' -57.1 NC_005264.1 + 8323 0.69 0.726399
Target:  5'- gCUUgUUUGCGCgCggcaUGUGCGCCCC-GCa -3'
miRNA:   3'- -GAGaAGACGCG-Ga---AUACGCGGGGcCG- -5'
24683 5' -57.1 NC_005264.1 + 18987 0.66 0.886019
Target:  5'- gUCUUCgUGCGCCUUcauggGCGUaCCCaaacaagauaagcgGGCg -3'
miRNA:   3'- gAGAAG-ACGCGGAAua---CGCG-GGG--------------CCG- -5'
24683 5' -57.1 NC_005264.1 + 22150 0.68 0.792442
Target:  5'- ------cGCGCCUUAgauUGCGCCgCgGGCc -3'
miRNA:   3'- gagaagaCGCGGAAU---ACGCGG-GgCCG- -5'
24683 5' -57.1 NC_005264.1 + 25401 0.67 0.835532
Target:  5'- uUCUaUCUGCGCagcuauCUcGUGCGCCa-GGCg -3'
miRNA:   3'- gAGA-AGACGCG------GAaUACGCGGggCCG- -5'
24683 5' -57.1 NC_005264.1 + 26351 0.71 0.625984
Target:  5'- ----cCUuaGUCUUGUGCGCCgCGGCa -3'
miRNA:   3'- gagaaGAcgCGGAAUACGCGGgGCCG- -5'
24683 5' -57.1 NC_005264.1 + 29583 0.68 0.783364
Target:  5'- gUCg-CUGCGuCCUUugucuUGCGCgUCGGCg -3'
miRNA:   3'- gAGaaGACGC-GGAAu----ACGCGgGGCCG- -5'
24683 5' -57.1 NC_005264.1 + 30370 0.71 0.605697
Target:  5'- -cCUUCgGCGCCgccgcgucGCGUCUCGGCg -3'
miRNA:   3'- gaGAAGaCGCGGaaua----CGCGGGGCCG- -5'
24683 5' -57.1 NC_005264.1 + 33488 0.66 0.874087
Target:  5'- cCUCgUUCcGCGCUUgcucaGUGCGCgucgcugcgCCCGGUa -3'
miRNA:   3'- -GAG-AAGaCGCGGAa----UACGCG---------GGGCCG- -5'
24683 5' -57.1 NC_005264.1 + 40054 0.67 0.843634
Target:  5'- ------aGgGCCcgcaGCGCCCCGGCg -3'
miRNA:   3'- gagaagaCgCGGaauaCGCGGGGCCG- -5'
24683 5' -57.1 NC_005264.1 + 40929 0.68 0.755363
Target:  5'- cCUCcccgCcGCGCC----GCGCCCCGGUc -3'
miRNA:   3'- -GAGaa--GaCGCGGaauaCGCGGGGCCG- -5'
24683 5' -57.1 NC_005264.1 + 41021 0.66 0.873366
Target:  5'- uUCgccgCUGUGCCUUccacGUGCCCCuccuaacguauugGGCg -3'
miRNA:   3'- gAGaa--GACGCGGAAua--CGCGGGG-------------CCG- -5'
24683 5' -57.1 NC_005264.1 + 41723 0.66 0.881182
Target:  5'- aUCUUCUcGCGCCag--GCGgCagCGGCg -3'
miRNA:   3'- gAGAAGA-CGCGGaauaCGCgGg-GCCG- -5'
24683 5' -57.1 NC_005264.1 + 42726 0.67 0.827247
Target:  5'- gCUCg-CUGCGCCccacuucUGCGCggcaCCCGGUg -3'
miRNA:   3'- -GAGaaGACGCGGaau----ACGCG----GGGCCG- -5'
24683 5' -57.1 NC_005264.1 + 44759 0.74 0.44127
Target:  5'- -aCUUCgUGCGCCcaaagGUGCCCgCGGCg -3'
miRNA:   3'- gaGAAG-ACGCGGaaua-CGCGGG-GCCG- -5'
24683 5' -57.1 NC_005264.1 + 46773 0.73 0.487386
Target:  5'- aUCUUCgcuuggGCGCgUUAcUGCGCCCC-GCa -3'
miRNA:   3'- gAGAAGa-----CGCGgAAU-ACGCGGGGcCG- -5'
24683 5' -57.1 NC_005264.1 + 55328 0.67 0.827247
Target:  5'- aCUUUUCacgUGCGCgUUGU-CGCUCgCGGCg -3'
miRNA:   3'- -GAGAAG---ACGCGgAAUAcGCGGG-GCCG- -5'
24683 5' -57.1 NC_005264.1 + 58672 0.7 0.66655
Target:  5'- uUCUcCgGCGCUgcagGCGCaCCCGGCc -3'
miRNA:   3'- gAGAaGaCGCGGaauaCGCG-GGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.