miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24683 5' -57.1 NC_005264.1 + 59701 0.68 0.755363
Target:  5'- ---cUUUGCGCCgc--GCGCCgcgCCGGCg -3'
miRNA:   3'- gagaAGACGCGGaauaCGCGG---GGCCG- -5'
24683 5' -57.1 NC_005264.1 + 61477 0.66 0.881182
Target:  5'- uUCgUUCUagcGCGCCgac-GCGCCCC-GCg -3'
miRNA:   3'- gAG-AAGA---CGCGGaauaCGCGGGGcCG- -5'
24683 5' -57.1 NC_005264.1 + 64787 0.66 0.874087
Target:  5'- ---aUCUGCGCgca--GCGCCCCcaugGGCa -3'
miRNA:   3'- gagaAGACGCGgaauaCGCGGGG----CCG- -5'
24683 5' -57.1 NC_005264.1 + 68273 0.66 0.881182
Target:  5'- -gCUgCUGcCGCCUcuuUGCGUCCCcagcGGCa -3'
miRNA:   3'- gaGAaGAC-GCGGAau-ACGCGGGG----CCG- -5'
24683 5' -57.1 NC_005264.1 + 71428 0.68 0.764816
Target:  5'- ----aCUcCGCCg---GUGCCCCGGCg -3'
miRNA:   3'- gagaaGAcGCGGaauaCGCGGGGCCG- -5'
24683 5' -57.1 NC_005264.1 + 71774 0.67 0.825569
Target:  5'- -cCUgCUgGCGCCguugcagaaGCGCCUCGGCu -3'
miRNA:   3'- gaGAaGA-CGCGGaaua-----CGCGGGGCCG- -5'
24683 5' -57.1 NC_005264.1 + 74670 0.69 0.706675
Target:  5'- gCUCUugagCUgGUGCgUUA-GCGCCaCCGGCg -3'
miRNA:   3'- -GAGAa---GA-CGCGgAAUaCGCGG-GGCCG- -5'
24683 5' -57.1 NC_005264.1 + 75085 0.67 0.827247
Target:  5'- uUCUUCgcgGCGCUgcg-GCagGCgCCGGCg -3'
miRNA:   3'- gAGAAGa--CGCGGaauaCG--CGgGGCCG- -5'
24683 5' -57.1 NC_005264.1 + 75701 0.69 0.716572
Target:  5'- gUCUUUcgGCGCgaagaCUgGUGCGCCCCgcgGGCg -3'
miRNA:   3'- gAGAAGa-CGCG-----GAaUACGCGGGG---CCG- -5'
24683 5' -57.1 NC_005264.1 + 78631 0.67 0.827247
Target:  5'- cCUCUUCUGUuaaccGCCgcg-GCGgCCCUGuGCc -3'
miRNA:   3'- -GAGAAGACG-----CGGaauaCGC-GGGGC-CG- -5'
24683 5' -57.1 NC_005264.1 + 79723 0.66 0.881182
Target:  5'- ---cUCcGCgGCCUUG-GCGCCCguCGGCg -3'
miRNA:   3'- gagaAGaCG-CGGAAUaCGCGGG--GCCG- -5'
24683 5' -57.1 NC_005264.1 + 80840 0.67 0.810162
Target:  5'- aUC-UCUGCgGCCUUAcGCGUUCUGGa -3'
miRNA:   3'- gAGaAGACG-CGGAAUaCGCGGGGCCg -5'
24683 5' -57.1 NC_005264.1 + 84014 0.66 0.872643
Target:  5'- -gCUUCUGCGCCggacaagaagaAUGCGCCgacuaaCGcGCu -3'
miRNA:   3'- gaGAAGACGCGGaa---------UACGCGGg-----GC-CG- -5'
24683 5' -57.1 NC_005264.1 + 85053 0.72 0.525854
Target:  5'- ---gUCUGCGCCgcgGUGCGUCUcugCGGCc -3'
miRNA:   3'- gagaAGACGCGGaa-UACGCGGG---GCCG- -5'
24683 5' -57.1 NC_005264.1 + 86640 0.75 0.381103
Target:  5'- cCUCUUCUGCGUUgg--GCGCCgCGGg -3'
miRNA:   3'- -GAGAAGACGCGGaauaCGCGGgGCCg -5'
24683 5' -57.1 NC_005264.1 + 90684 0.68 0.792442
Target:  5'- aUCgagUCUaGCGCCUUGaGCGCCagcaucaugCCGGa -3'
miRNA:   3'- gAGa--AGA-CGCGGAAUaCGCGG---------GGCCg -5'
24683 5' -57.1 NC_005264.1 + 93539 0.66 0.888734
Target:  5'- --gUUCUGCGUUUUA-GCGCCCaucagaguccacaggGGCg -3'
miRNA:   3'- gagAAGACGCGGAAUaCGCGGGg--------------CCG- -5'
24683 5' -57.1 NC_005264.1 + 96292 0.69 0.696715
Target:  5'- ------cGCGCUc-GUGCGCCUCGGCg -3'
miRNA:   3'- gagaagaCGCGGaaUACGCGGGGCCG- -5'
24683 5' -57.1 NC_005264.1 + 97294 0.67 0.827247
Target:  5'- aCUCUUg-GUGCgaUGgcaacuagaggGCGCCCCGGUg -3'
miRNA:   3'- -GAGAAgaCGCGgaAUa----------CGCGGGGCCG- -5'
24683 5' -57.1 NC_005264.1 + 98059 0.66 0.881182
Target:  5'- aCUCguucCUGaauaaguguUGCaugGUGUGCCCCGGCc -3'
miRNA:   3'- -GAGaa--GAC---------GCGgaaUACGCGGGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.