miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24683 5' -57.1 NC_005264.1 + 160321 0.66 0.859264
Target:  5'- gUgUUCUGCGCacccUGUaccuCCCCGGCa -3'
miRNA:   3'- gAgAAGACGCGgaauACGc---GGGGCCG- -5'
24683 5' -57.1 NC_005264.1 + 159956 0.68 0.755363
Target:  5'- cCUCcccgCcGCGCC----GCGCCCCGGUc -3'
miRNA:   3'- -GAGaa--GaCGCGGaauaCGCGGGGCCG- -5'
24683 5' -57.1 NC_005264.1 + 159081 0.67 0.843634
Target:  5'- ------aGgGCCcgcaGCGCCCCGGCg -3'
miRNA:   3'- gagaagaCgCGGaauaCGCGGGGCCG- -5'
24683 5' -57.1 NC_005264.1 + 152515 0.66 0.874087
Target:  5'- cCUCgUUCcGCGCUUgcucaGUGCGCgucgcugcgCCCGGUa -3'
miRNA:   3'- -GAG-AAGaCGCGGAa----UACGCG---------GGGCCG- -5'
24683 5' -57.1 NC_005264.1 + 149397 0.71 0.605697
Target:  5'- -cCUUCgGCGCCgccgcgucGCGUCUCGGCg -3'
miRNA:   3'- gaGAAGaCGCGGaaua----CGCGGGGCCG- -5'
24683 5' -57.1 NC_005264.1 + 148147 0.73 0.496884
Target:  5'- gCUCUgcUCgcgaaGgGCCaagUAUGgGCCCCGGCa -3'
miRNA:   3'- -GAGA--AGa----CgCGGa--AUACgCGGGGCCG- -5'
24683 5' -57.1 NC_005264.1 + 146714 0.72 0.534671
Target:  5'- uUCUUCUGUGCCUgAUGaGCggggcagaaagaaCCCGGCc -3'
miRNA:   3'- gAGAAGACGCGGAaUACgCG-------------GGGCCG- -5'
24683 5' -57.1 NC_005264.1 + 146337 0.66 0.881182
Target:  5'- aUCcgUCUGCGCCggc-GUGCCUCGa- -3'
miRNA:   3'- gAGa-AGACGCGGaauaCGCGGGGCcg -5'
24683 5' -57.1 NC_005264.1 + 146267 0.73 0.506464
Target:  5'- gUCaUgUGCGCCgc---CGCCCCGGCg -3'
miRNA:   3'- gAGaAgACGCGGaauacGCGGGGCCG- -5'
24683 5' -57.1 NC_005264.1 + 146002 0.69 0.706675
Target:  5'- cCUCUacggCgUGCGCgUUAUGgGCUCgGGCg -3'
miRNA:   3'- -GAGAa---G-ACGCGgAAUACgCGGGgCCG- -5'
24683 5' -57.1 NC_005264.1 + 143735 0.7 0.686702
Target:  5'- gCUCgUCUccGCGCCgccgcgGUGCaGUCCUGGCu -3'
miRNA:   3'- -GAGaAGA--CGCGGaa----UACG-CGGGGCCG- -5'
24683 5' -57.1 NC_005264.1 + 138603 0.66 0.888059
Target:  5'- -aCUUCgGCGCCggagUGUcuuacuaucccgGCGCgCUGGCu -3'
miRNA:   3'- gaGAAGaCGCGGa---AUA------------CGCGgGGCCG- -5'
24683 5' -57.1 NC_005264.1 + 137963 0.67 0.843634
Target:  5'- ------aGCgaaGCCUcGUGcCGCCCCGGCu -3'
miRNA:   3'- gagaagaCG---CGGAaUAC-GCGGGGCCG- -5'
24683 5' -57.1 NC_005264.1 + 135386 0.67 0.835532
Target:  5'- cCUUUgCUGCGCCgcucgGCGCagguCUGGCu -3'
miRNA:   3'- -GAGAaGACGCGGaaua-CGCGg---GGCCG- -5'
24683 5' -57.1 NC_005264.1 + 131733 0.66 0.86678
Target:  5'- gCUCUg--GCGCUacaAUGCGCUaCGGCg -3'
miRNA:   3'- -GAGAagaCGCGGaa-UACGCGGgGCCG- -5'
24683 5' -57.1 NC_005264.1 + 126845 0.67 0.827247
Target:  5'- cCUCgucgCUGCGCgUUucgcucuccGCGCCCCcuccaGGCg -3'
miRNA:   3'- -GAGaa--GACGCGgAAua-------CGCGGGG-----CCG- -5'
24683 5' -57.1 NC_005264.1 + 125577 0.66 0.859264
Target:  5'- -gCUUCggcaggaGCGCCUcguccacggugAUGCGCCCCccaggGGCc -3'
miRNA:   3'- gaGAAGa------CGCGGAa----------UACGCGGGG-----CCG- -5'
24683 5' -57.1 NC_005264.1 + 120541 0.66 0.851547
Target:  5'- -gCUggCUGCGCCguuuuuugGgGCCCCgcGGCg -3'
miRNA:   3'- gaGAa-GACGCGGaaua----CgCGGGG--CCG- -5'
24683 5' -57.1 NC_005264.1 + 115028 1.12 0.001457
Target:  5'- gCUCUUCUGCGCCUUAUGCGCCCCGGCg -3'
miRNA:   3'- -GAGAAGACGCGGAAUACGCGGGGCCG- -5'
24683 5' -57.1 NC_005264.1 + 114765 0.66 0.888059
Target:  5'- uUCUUgccCUGCGCCgcucggccgAUGU-CCCUGGCc -3'
miRNA:   3'- gAGAA---GACGCGGaa-------UACGcGGGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.