miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24683 5' -57.1 NC_005264.1 + 115028 1.12 0.001457
Target:  5'- gCUCUUCUGCGCCUUAUGCGCCCCGGCg -3'
miRNA:   3'- -GAGAAGACGCGGAAUACGCGGGGCCG- -5'
24683 5' -57.1 NC_005264.1 + 159081 0.67 0.843634
Target:  5'- ------aGgGCCcgcaGCGCCCCGGCg -3'
miRNA:   3'- gagaagaCgCGGaauaCGCGGGGCCG- -5'
24683 5' -57.1 NC_005264.1 + 125577 0.66 0.859264
Target:  5'- -gCUUCggcaggaGCGCCUcguccacggugAUGCGCCCCccaggGGCc -3'
miRNA:   3'- gaGAAGa------CGCGGAa----------UACGCGGGG-----CCG- -5'
24683 5' -57.1 NC_005264.1 + 146337 0.66 0.881182
Target:  5'- aUCcgUCUGCGCCggc-GUGCCUCGa- -3'
miRNA:   3'- gAGa-AGACGCGGaauaCGCGGGGCcg -5'
24683 5' -57.1 NC_005264.1 + 75701 0.69 0.716572
Target:  5'- gUCUUUcgGCGCgaagaCUgGUGCGCCCCgcgGGCg -3'
miRNA:   3'- gAGAAGa-CGCG-----GAaUACGCGGGG---CCG- -5'
24683 5' -57.1 NC_005264.1 + 8323 0.69 0.726399
Target:  5'- gCUUgUUUGCGCgCggcaUGUGCGCCCC-GCa -3'
miRNA:   3'- -GAGaAGACGCG-Ga---AUACGCGGGGcCG- -5'
24683 5' -57.1 NC_005264.1 + 59701 0.68 0.755363
Target:  5'- ---cUUUGCGCCgc--GCGCCgcgCCGGCg -3'
miRNA:   3'- gagaAGACGCGGaauaCGCGG---GGCCG- -5'
24683 5' -57.1 NC_005264.1 + 71428 0.68 0.764816
Target:  5'- ----aCUcCGCCg---GUGCCCCGGCg -3'
miRNA:   3'- gagaaGAcGCGGaauaCGCGGGGCCG- -5'
24683 5' -57.1 NC_005264.1 + 78631 0.67 0.827247
Target:  5'- cCUCUUCUGUuaaccGCCgcg-GCGgCCCUGuGCc -3'
miRNA:   3'- -GAGAAGACG-----CGGaauaCGC-GGGGC-CG- -5'
24683 5' -57.1 NC_005264.1 + 8254 0.67 0.835532
Target:  5'- ---gUCUG-GCCagcgGCGCCCUGGUg -3'
miRNA:   3'- gagaAGACgCGGaauaCGCGGGGCCG- -5'
24683 5' -57.1 NC_005264.1 + 97294 0.67 0.827247
Target:  5'- aCUCUUg-GUGCgaUGgcaacuagaggGCGCCCCGGUg -3'
miRNA:   3'- -GAGAAgaCGCGgaAUa----------CGCGGGGCCG- -5'
24683 5' -57.1 NC_005264.1 + 42726 0.67 0.827247
Target:  5'- gCUCg-CUGCGCCccacuucUGCGCggcaCCCGGUg -3'
miRNA:   3'- -GAGaaGACGCGGaau----ACGCG----GGGCCG- -5'
24683 5' -57.1 NC_005264.1 + 149397 0.71 0.605697
Target:  5'- -cCUUCgGCGCCgccgcgucGCGUCUCGGCg -3'
miRNA:   3'- gaGAAGaCGCGGaaua----CGCGGGGCCG- -5'
24683 5' -57.1 NC_005264.1 + 55328 0.67 0.827247
Target:  5'- aCUUUUCacgUGCGCgUUGU-CGCUCgCGGCg -3'
miRNA:   3'- -GAGAAG---ACGCGgAAUAcGCGGG-GCCG- -5'
24683 5' -57.1 NC_005264.1 + 96292 0.69 0.696715
Target:  5'- ------cGCGCUc-GUGCGCCUCGGCg -3'
miRNA:   3'- gagaagaCGCGGaaUACGCGGGGCCG- -5'
24683 5' -57.1 NC_005264.1 + 22150 0.68 0.792442
Target:  5'- ------cGCGCCUUAgauUGCGCCgCgGGCc -3'
miRNA:   3'- gagaagaCGCGGAAU---ACGCGG-GgCCG- -5'
24683 5' -57.1 NC_005264.1 + 25401 0.67 0.835532
Target:  5'- uUCUaUCUGCGCagcuauCUcGUGCGCCa-GGCg -3'
miRNA:   3'- gAGA-AGACGCG------GAaUACGCGGggCCG- -5'
24683 5' -57.1 NC_005264.1 + 120541 0.66 0.851547
Target:  5'- -gCUggCUGCGCCguuuuuugGgGCCCCgcGGCg -3'
miRNA:   3'- gaGAa-GACGCGGaaua----CgCGGGG--CCG- -5'
24683 5' -57.1 NC_005264.1 + 146002 0.69 0.706675
Target:  5'- cCUCUacggCgUGCGCgUUAUGgGCUCgGGCg -3'
miRNA:   3'- -GAGAa---G-ACGCGgAAUACgCGGGgCCG- -5'
24683 5' -57.1 NC_005264.1 + 159956 0.68 0.755363
Target:  5'- cCUCcccgCcGCGCC----GCGCCCCGGUc -3'
miRNA:   3'- -GAGaa--GaCGCGGaauaCGCGGGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.