miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24683 5' -57.1 NC_005264.1 + 97294 0.67 0.827247
Target:  5'- aCUCUUg-GUGCgaUGgcaacuagaggGCGCCCCGGUg -3'
miRNA:   3'- -GAGAAgaCGCGgaAUa----------CGCGGGGCCG- -5'
24683 5' -57.1 NC_005264.1 + 98059 0.66 0.881182
Target:  5'- aCUCguucCUGaauaaguguUGCaugGUGUGCCCCGGCc -3'
miRNA:   3'- -GAGaa--GAC---------GCGgaaUACGCGGGGCCG- -5'
24683 5' -57.1 NC_005264.1 + 125577 0.66 0.859264
Target:  5'- -gCUUCggcaggaGCGCCUcguccacggugAUGCGCCCCccaggGGCc -3'
miRNA:   3'- gaGAAGa------CGCGGAa----------UACGCGGGG-----CCG- -5'
24683 5' -57.1 NC_005264.1 + 75085 0.67 0.827247
Target:  5'- uUCUUCgcgGCGCUgcg-GCagGCgCCGGCg -3'
miRNA:   3'- gAGAAGa--CGCGGaauaCG--CGgGGCCG- -5'
24683 5' -57.1 NC_005264.1 + 64787 0.66 0.874087
Target:  5'- ---aUCUGCGCgca--GCGCCCCcaugGGCa -3'
miRNA:   3'- gagaAGACGCGgaauaCGCGGGG----CCG- -5'
24683 5' -57.1 NC_005264.1 + 103115 0.66 0.881182
Target:  5'- aCUCUUCUaacgaGCC--AUGCGCgCCGGa -3'
miRNA:   3'- -GAGAAGAcg---CGGaaUACGCGgGGCCg -5'
24683 5' -57.1 NC_005264.1 + 79723 0.66 0.881182
Target:  5'- ---cUCcGCgGCCUUG-GCGCCCguCGGCg -3'
miRNA:   3'- gagaAGaCG-CGGAAUaCGCGGG--GCCG- -5'
24683 5' -57.1 NC_005264.1 + 78631 0.67 0.827247
Target:  5'- cCUCUUCUGUuaaccGCCgcg-GCGgCCCUGuGCc -3'
miRNA:   3'- -GAGAAGACG-----CGGaauaCGC-GGGGC-CG- -5'
24683 5' -57.1 NC_005264.1 + 42726 0.67 0.827247
Target:  5'- gCUCg-CUGCGCCccacuucUGCGCggcaCCCGGUg -3'
miRNA:   3'- -GAGaaGACGCGGaau----ACGCG----GGGCCG- -5'
24683 5' -57.1 NC_005264.1 + 55328 0.67 0.827247
Target:  5'- aCUUUUCacgUGCGCgUUGU-CGCUCgCGGCg -3'
miRNA:   3'- -GAGAAG---ACGCGgAAUAcGCGGG-GCCG- -5'
24683 5' -57.1 NC_005264.1 + 8254 0.67 0.835532
Target:  5'- ---gUCUG-GCCagcgGCGCCCUGGUg -3'
miRNA:   3'- gagaAGACgCGGaauaCGCGGGGCCG- -5'
24683 5' -57.1 NC_005264.1 + 160321 0.66 0.859264
Target:  5'- gUgUUCUGCGCacccUGUaccuCCCCGGCa -3'
miRNA:   3'- gAgAAGACGCGgaauACGc---GGGGCCG- -5'
24683 5' -57.1 NC_005264.1 + 44759 0.74 0.44127
Target:  5'- -aCUUCgUGCGCCcaaagGUGCCCgCGGCg -3'
miRNA:   3'- gaGAAG-ACGCGGaaua-CGCGGG-GCCG- -5'
24683 5' -57.1 NC_005264.1 + 46773 0.73 0.487386
Target:  5'- aUCUUCgcuuggGCGCgUUAcUGCGCCCC-GCa -3'
miRNA:   3'- gAGAAGa-----CGCGgAAU-ACGCGGGGcCG- -5'
24683 5' -57.1 NC_005264.1 + 148147 0.73 0.496884
Target:  5'- gCUCUgcUCgcgaaGgGCCaagUAUGgGCCCCGGCa -3'
miRNA:   3'- -GAGA--AGa----CgCGGa--AUACgCGGGGCCG- -5'
24683 5' -57.1 NC_005264.1 + 146267 0.73 0.506464
Target:  5'- gUCaUgUGCGCCgc---CGCCCCGGCg -3'
miRNA:   3'- gAGaAgACGCGGaauacGCGGGGCCG- -5'
24683 5' -57.1 NC_005264.1 + 85053 0.72 0.525854
Target:  5'- ---gUCUGCGCCgcgGUGCGUCUcugCGGCc -3'
miRNA:   3'- gagaAGACGCGGaa-UACGCGGG---GCCG- -5'
24683 5' -57.1 NC_005264.1 + 126845 0.67 0.827247
Target:  5'- cCUCgucgCUGCGCgUUucgcucuccGCGCCCCcuccaGGCg -3'
miRNA:   3'- -GAGaa--GACGCGgAAua-------CGCGGGG-----CCG- -5'
24683 5' -57.1 NC_005264.1 + 71774 0.67 0.825569
Target:  5'- -cCUgCUgGCGCCguugcagaaGCGCCUCGGCu -3'
miRNA:   3'- gaGAaGA-CGCGGaaua-----CGCGGGGCCG- -5'
24683 5' -57.1 NC_005264.1 + 80840 0.67 0.810162
Target:  5'- aUC-UCUGCgGCCUUAcGCGUUCUGGa -3'
miRNA:   3'- gAGaAGACG-CGGAAUaCGCGGGGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.