Results 41 - 60 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24683 | 5' | -57.1 | NC_005264.1 | + | 1514 | 0.66 | 0.851547 |
Target: 5'- -gCUggCUGCGCCguuuuuugGgGCCCCgcGGCg -3' miRNA: 3'- gaGAa-GACGCGGaaua----CgCGGGG--CCG- -5' |
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24683 | 5' | -57.1 | NC_005264.1 | + | 160321 | 0.66 | 0.859264 |
Target: 5'- gUgUUCUGCGCacccUGUaccuCCCCGGCa -3' miRNA: 3'- gAgAAGACGCGgaauACGc---GGGGCCG- -5' |
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24683 | 5' | -57.1 | NC_005264.1 | + | 131733 | 0.66 | 0.86678 |
Target: 5'- gCUCUg--GCGCUacaAUGCGCUaCGGCg -3' miRNA: 3'- -GAGAagaCGCGGaa-UACGCGGgGCCG- -5' |
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24683 | 5' | -57.1 | NC_005264.1 | + | 33488 | 0.66 | 0.874087 |
Target: 5'- cCUCgUUCcGCGCUUgcucaGUGCGCgucgcugcgCCCGGUa -3' miRNA: 3'- -GAG-AAGaCGCGGAa----UACGCG---------GGGCCG- -5' |
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24683 | 5' | -57.1 | NC_005264.1 | + | 18987 | 0.66 | 0.886019 |
Target: 5'- gUCUUCgUGCGCCUUcauggGCGUaCCCaaacaagauaagcgGGCg -3' miRNA: 3'- gAGAAG-ACGCGGAAua---CGCG-GGG--------------CCG- -5' |
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24683 | 5' | -57.1 | NC_005264.1 | + | 114765 | 0.66 | 0.888059 |
Target: 5'- uUCUUgccCUGCGCCgcucggccgAUGU-CCCUGGCc -3' miRNA: 3'- gAGAA---GACGCGGaa-------UACGcGGGGCCG- -5' |
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24683 | 5' | -57.1 | NC_005264.1 | + | 90684 | 0.68 | 0.792442 |
Target: 5'- aUCgagUCUaGCGCCUUGaGCGCCagcaucaugCCGGa -3' miRNA: 3'- gAGa--AGA-CGCGGAAUaCGCGG---------GGCCg -5' |
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24683 | 5' | -57.1 | NC_005264.1 | + | 29583 | 0.68 | 0.783364 |
Target: 5'- gUCg-CUGCGuCCUUugucuUGCGCgUCGGCg -3' miRNA: 3'- gAGaaGACGC-GGAAu----ACGCGgGGCCG- -5' |
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24683 | 5' | -57.1 | NC_005264.1 | + | 44759 | 0.74 | 0.44127 |
Target: 5'- -aCUUCgUGCGCCcaaagGUGCCCgCGGCg -3' miRNA: 3'- gaGAAG-ACGCGGaaua-CGCGGG-GCCG- -5' |
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24683 | 5' | -57.1 | NC_005264.1 | + | 46773 | 0.73 | 0.487386 |
Target: 5'- aUCUUCgcuuggGCGCgUUAcUGCGCCCC-GCa -3' miRNA: 3'- gAGAAGa-----CGCGgAAU-ACGCGGGGcCG- -5' |
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24683 | 5' | -57.1 | NC_005264.1 | + | 148147 | 0.73 | 0.496884 |
Target: 5'- gCUCUgcUCgcgaaGgGCCaagUAUGgGCCCCGGCa -3' miRNA: 3'- -GAGA--AGa----CgCGGa--AUACgCGGGGCCG- -5' |
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24683 | 5' | -57.1 | NC_005264.1 | + | 146267 | 0.73 | 0.506464 |
Target: 5'- gUCaUgUGCGCCgc---CGCCCCGGCg -3' miRNA: 3'- gAGaAgACGCGGaauacGCGGGGCCG- -5' |
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24683 | 5' | -57.1 | NC_005264.1 | + | 85053 | 0.72 | 0.525854 |
Target: 5'- ---gUCUGCGCCgcgGUGCGUCUcugCGGCc -3' miRNA: 3'- gagaAGACGCGGaa-UACGCGGG---GCCG- -5' |
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24683 | 5' | -57.1 | NC_005264.1 | + | 146714 | 0.72 | 0.534671 |
Target: 5'- uUCUUCUGUGCCUgAUGaGCggggcagaaagaaCCCGGCc -3' miRNA: 3'- gAGAAGACGCGGAaUACgCG-------------GGGCCG- -5' |
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24683 | 5' | -57.1 | NC_005264.1 | + | 26351 | 0.71 | 0.625984 |
Target: 5'- ----cCUuaGUCUUGUGCGCCgCGGCa -3' miRNA: 3'- gagaaGAcgCGGAAUACGCGGgGCCG- -5' |
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24683 | 5' | -57.1 | NC_005264.1 | + | 104066 | 0.7 | 0.664528 |
Target: 5'- aUCcUCUGCGCCgaccaccgcgcGUGCGCCUcugauagcgcagCGGCg -3' miRNA: 3'- gAGaAGACGCGGaa---------UACGCGGG------------GCCG- -5' |
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24683 | 5' | -57.1 | NC_005264.1 | + | 58672 | 0.7 | 0.66655 |
Target: 5'- uUCUcCgGCGCUgcagGCGCaCCCGGCc -3' miRNA: 3'- gAGAaGaCGCGGaauaCGCG-GGGCCG- -5' |
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24683 | 5' | -57.1 | NC_005264.1 | + | 143735 | 0.7 | 0.686702 |
Target: 5'- gCUCgUCUccGCGCCgccgcgGUGCaGUCCUGGCu -3' miRNA: 3'- -GAGaAGA--CGCGGaa----UACG-CGGGGCCG- -5' |
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24683 | 5' | -57.1 | NC_005264.1 | + | 74670 | 0.69 | 0.706675 |
Target: 5'- gCUCUugagCUgGUGCgUUA-GCGCCaCCGGCg -3' miRNA: 3'- -GAGAa---GA-CGCGgAAUaCGCGG-GGCCG- -5' |
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24683 | 5' | -57.1 | NC_005264.1 | + | 40929 | 0.68 | 0.755363 |
Target: 5'- cCUCcccgCcGCGCC----GCGCCCCGGUc -3' miRNA: 3'- -GAGaa--GaCGCGGaauaCGCGGGGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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