miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24683 5' -57.1 NC_005264.1 + 58672 0.7 0.66655
Target:  5'- uUCUcCgGCGCUgcagGCGCaCCCGGCc -3'
miRNA:   3'- gAGAaGaCGCGGaauaCGCG-GGGCCG- -5'
24683 5' -57.1 NC_005264.1 + 126845 0.67 0.827247
Target:  5'- cCUCgucgCUGCGCgUUucgcucuccGCGCCCCcuccaGGCg -3'
miRNA:   3'- -GAGaa--GACGCGgAAua-------CGCGGGG-----CCG- -5'
24683 5' -57.1 NC_005264.1 + 71774 0.67 0.825569
Target:  5'- -cCUgCUgGCGCCguugcagaaGCGCCUCGGCu -3'
miRNA:   3'- gaGAaGA-CGCGGaaua-----CGCGGGGCCG- -5'
24683 5' -57.1 NC_005264.1 + 80840 0.67 0.810162
Target:  5'- aUC-UCUGCgGCCUUAcGCGUUCUGGa -3'
miRNA:   3'- gAGaAGACG-CGGAAUaCGCGGGGCCg -5'
24683 5' -57.1 NC_005264.1 + 90684 0.68 0.792442
Target:  5'- aUCgagUCUaGCGCCUUGaGCGCCagcaucaugCCGGa -3'
miRNA:   3'- gAGa--AGA-CGCGGAAUaCGCGG---------GGCCg -5'
24683 5' -57.1 NC_005264.1 + 29583 0.68 0.783364
Target:  5'- gUCg-CUGCGuCCUUugucuUGCGCgUCGGCg -3'
miRNA:   3'- gAGaaGACGC-GGAAu----ACGCGgGGCCG- -5'
24683 5' -57.1 NC_005264.1 + 40929 0.68 0.755363
Target:  5'- cCUCcccgCcGCGCC----GCGCCCCGGUc -3'
miRNA:   3'- -GAGaa--GaCGCGGaauaCGCGGGGCCG- -5'
24683 5' -57.1 NC_005264.1 + 74670 0.69 0.706675
Target:  5'- gCUCUugagCUgGUGCgUUA-GCGCCaCCGGCg -3'
miRNA:   3'- -GAGAa---GA-CGCGgAAUaCGCGG-GGCCG- -5'
24683 5' -57.1 NC_005264.1 + 143735 0.7 0.686702
Target:  5'- gCUCgUCUccGCGCCgccgcgGUGCaGUCCUGGCu -3'
miRNA:   3'- -GAGaAGA--CGCGGaa----UACG-CGGGGCCG- -5'
24683 5' -57.1 NC_005264.1 + 135386 0.67 0.835532
Target:  5'- cCUUUgCUGCGCCgcucgGCGCagguCUGGCu -3'
miRNA:   3'- -GAGAaGACGCGGaaua-CGCGg---GGCCG- -5'
24683 5' -57.1 NC_005264.1 + 40054 0.67 0.843634
Target:  5'- ------aGgGCCcgcaGCGCCCCGGCg -3'
miRNA:   3'- gagaagaCgCGGaauaCGCGGGGCCG- -5'
24683 5' -57.1 NC_005264.1 + 137963 0.67 0.843634
Target:  5'- ------aGCgaaGCCUcGUGcCGCCCCGGCu -3'
miRNA:   3'- gagaagaCG---CGGAaUAC-GCGGGGCCG- -5'
24683 5' -57.1 NC_005264.1 + 138603 0.66 0.888059
Target:  5'- -aCUUCgGCGCCggagUGUcuuacuaucccgGCGCgCUGGCu -3'
miRNA:   3'- gaGAAGaCGCGGa---AUA------------CGCGgGGCCG- -5'
24683 5' -57.1 NC_005264.1 + 114765 0.66 0.888059
Target:  5'- uUCUUgccCUGCGCCgcucggccgAUGU-CCCUGGCc -3'
miRNA:   3'- gAGAA---GACGCGGaa-------UACGcGGGGCCG- -5'
24683 5' -57.1 NC_005264.1 + 18987 0.66 0.886019
Target:  5'- gUCUUCgUGCGCCUUcauggGCGUaCCCaaacaagauaagcgGGCg -3'
miRNA:   3'- gAGAAG-ACGCGGAAua---CGCG-GGG--------------CCG- -5'
24683 5' -57.1 NC_005264.1 + 33488 0.66 0.874087
Target:  5'- cCUCgUUCcGCGCUUgcucaGUGCGCgucgcugcgCCCGGUa -3'
miRNA:   3'- -GAG-AAGaCGCGGAa----UACGCG---------GGGCCG- -5'
24683 5' -57.1 NC_005264.1 + 131733 0.66 0.86678
Target:  5'- gCUCUg--GCGCUacaAUGCGCUaCGGCg -3'
miRNA:   3'- -GAGAagaCGCGGaa-UACGCGGgGCCG- -5'
24683 5' -57.1 NC_005264.1 + 160321 0.66 0.859264
Target:  5'- gUgUUCUGCGCacccUGUaccuCCCCGGCa -3'
miRNA:   3'- gAgAAGACGCGgaauACGc---GGGGCCG- -5'
24683 5' -57.1 NC_005264.1 + 6550 0.66 0.859264
Target:  5'- -gCUUCggcaggaGCGCCUcguccacggugAUGCGCCCCccaggGGCc -3'
miRNA:   3'- gaGAAGa------CGCGGAa----------UACGCGGGG-----CCG- -5'
24683 5' -57.1 NC_005264.1 + 1514 0.66 0.851547
Target:  5'- -gCUggCUGCGCCguuuuuugGgGCCCCgcGGCg -3'
miRNA:   3'- gaGAa-GACGCGGaaua----CgCGGGG--CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.