miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24684 5' -51.2 NC_005264.1 + 18313 0.66 0.994757
Target:  5'- uGCGCGAGGCCgucCGUCuauuGcuAUCu -3'
miRNA:   3'- cCGUGCUCCGGaa-GCAGugu-CuuUAG- -5'
24684 5' -51.2 NC_005264.1 + 103252 0.66 0.994757
Target:  5'- -uCACGuauaguGGCCUUCuucugCGCGGAGGUCc -3'
miRNA:   3'- ccGUGCu-----CCGGAAGca---GUGUCUUUAG- -5'
24684 5' -51.2 NC_005264.1 + 121783 0.66 0.994757
Target:  5'- cGGCGCGucccccGGcGCCguacCGUCugGGGAGUg -3'
miRNA:   3'- -CCGUGC------UC-CGGaa--GCAGugUCUUUAg -5'
24684 5' -51.2 NC_005264.1 + 16762 0.66 0.994757
Target:  5'- cGGUAgCGAGGUCccgaUCGUCGcCGGcgGUCu -3'
miRNA:   3'- -CCGU-GCUCCGGa---AGCAGU-GUCuuUAG- -5'
24684 5' -51.2 NC_005264.1 + 100738 0.66 0.994757
Target:  5'- gGGCGCuggucGAGcucGCCgaggCGUCacgACAGAAAUCg -3'
miRNA:   3'- -CCGUG-----CUC---CGGaa--GCAG---UGUCUUUAG- -5'
24684 5' -51.2 NC_005264.1 + 2757 0.66 0.994757
Target:  5'- cGGCGCGucccccGGcGCCguacCGUCugGGGAGUg -3'
miRNA:   3'- -CCGUGC------UC-CGGaa--GCAGugUCUUUAg -5'
24684 5' -51.2 NC_005264.1 + 19443 0.66 0.994009
Target:  5'- aGGCGCGAGGCgCUcaUCGgcaccaguauaugcgCGCGGGu--- -3'
miRNA:   3'- -CCGUGCUCCG-GA--AGCa--------------GUGUCUuuag -5'
24684 5' -51.2 NC_005264.1 + 13905 0.66 0.993921
Target:  5'- aGGCgACGGGGCgCgaaCGUC-CAGGAggCa -3'
miRNA:   3'- -CCG-UGCUCCG-Gaa-GCAGuGUCUUuaG- -5'
24684 5' -51.2 NC_005264.1 + 72316 0.66 0.992979
Target:  5'- uGGCguugGCGGuuuGGCCUUCGUCGauggccgAGAcGUCa -3'
miRNA:   3'- -CCG----UGCU---CCGGAAGCAGUg------UCUuUAG- -5'
24684 5' -51.2 NC_005264.1 + 114693 0.66 0.992979
Target:  5'- gGGCAacgugUGAGGgg-UCGUCGCAGuAGUCc -3'
miRNA:   3'- -CCGU-----GCUCCggaAGCAGUGUCuUUAG- -5'
24684 5' -51.2 NC_005264.1 + 137410 0.66 0.991925
Target:  5'- aGGCACGaAGGCCaaUCGUaucgccuggCGCAcGAGAUa -3'
miRNA:   3'- -CCGUGC-UCCGGa-AGCA---------GUGU-CUUUAg -5'
24684 5' -51.2 NC_005264.1 + 81848 0.66 0.990749
Target:  5'- aGGCG-GAGGCCacgucggCGUCGaggaAGAAAUUg -3'
miRNA:   3'- -CCGUgCUCCGGaa-----GCAGUg---UCUUUAG- -5'
24684 5' -51.2 NC_005264.1 + 77984 0.66 0.989443
Target:  5'- uGGCGCGAgauacgaaGGCCg-CGaUCGCGGGcGAUCa -3'
miRNA:   3'- -CCGUGCU--------CCGGaaGC-AGUGUCU-UUAG- -5'
24684 5' -51.2 NC_005264.1 + 73609 0.67 0.987997
Target:  5'- gGGC-CGcAGGCCUgcugggCGUUACAGuuuUCc -3'
miRNA:   3'- -CCGuGC-UCCGGAa-----GCAGUGUCuuuAG- -5'
24684 5' -51.2 NC_005264.1 + 79440 0.67 0.987997
Target:  5'- cGGUGCGGGGUCUcCGgggGCAGAuuAUCu -3'
miRNA:   3'- -CCGUGCUCCGGAaGCag-UGUCUu-UAG- -5'
24684 5' -51.2 NC_005264.1 + 116289 0.67 0.987535
Target:  5'- uGGCGCGGgcggcuacggcuguGGCCUUCG--ACGGGAAc- -3'
miRNA:   3'- -CCGUGCU--------------CCGGAAGCagUGUCUUUag -5'
24684 5' -51.2 NC_005264.1 + 74309 0.67 0.984649
Target:  5'- uGGCGCGcggcauGGCCaacgagUCGUCGuCGGuGAUCu -3'
miRNA:   3'- -CCGUGCu-----CCGGa-----AGCAGU-GUCuUUAG- -5'
24684 5' -51.2 NC_005264.1 + 82424 0.67 0.984649
Target:  5'- uGGCG-GGGGCagcagcugUCGUCGCgguAGAAGUCc -3'
miRNA:   3'- -CCGUgCUCCGga------AGCAGUG---UCUUUAG- -5'
24684 5' -51.2 NC_005264.1 + 1123 0.67 0.98273
Target:  5'- uGGCGCG-GGUCgUUGUgcaUGCGGggGUCg -3'
miRNA:   3'- -CCGUGCuCCGGaAGCA---GUGUCuuUAG- -5'
24684 5' -51.2 NC_005264.1 + 70195 0.67 0.980635
Target:  5'- cGGCGCGAgGGCCacgCG--GCAGGGAUg -3'
miRNA:   3'- -CCGUGCU-CCGGaa-GCagUGUCUUUAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.