miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24684 5' -51.2 NC_005264.1 + 115283 1.12 0.00561
Target:  5'- uGGCACGAGGCCUUCGUCACAGAAAUCu -3'
miRNA:   3'- -CCGUGCUCCGGAAGCAGUGUCUUUAG- -5'
24684 5' -51.2 NC_005264.1 + 91570 0.83 0.337267
Target:  5'- gGGCACGAGGCU--UGUCGCGGAGcUCa -3'
miRNA:   3'- -CCGUGCUCCGGaaGCAGUGUCUUuAG- -5'
24684 5' -51.2 NC_005264.1 + 50952 0.78 0.568823
Target:  5'- cGCGCGuGGCCUUCGuUCAUGGGAAg- -3'
miRNA:   3'- cCGUGCuCCGGAAGC-AGUGUCUUUag -5'
24684 5' -51.2 NC_005264.1 + 151352 0.74 0.784373
Target:  5'- gGGcCGCGcGGCCUUCGUUAUGGGcaGGUCc -3'
miRNA:   3'- -CC-GUGCuCCGGAAGCAGUGUCU--UUAG- -5'
24684 5' -51.2 NC_005264.1 + 108610 0.74 0.793765
Target:  5'- cGCGCGGGGCCgccUCGaCACAGGccUCu -3'
miRNA:   3'- cCGUGCUCCGGa--AGCaGUGUCUuuAG- -5'
24684 5' -51.2 NC_005264.1 + 55351 0.74 0.793765
Target:  5'- -uCGCGGcGGCCUUCGUCACAGc---- -3'
miRNA:   3'- ccGUGCU-CCGGAAGCAGUGUCuuuag -5'
24684 5' -51.2 NC_005264.1 + 3682 0.73 0.820978
Target:  5'- uGGUGCGGGGCCUgg--CGCGGAAAg- -3'
miRNA:   3'- -CCGUGCUCCGGAagcaGUGUCUUUag -5'
24684 5' -51.2 NC_005264.1 + 24885 0.72 0.873304
Target:  5'- cGGCACGAGGCUucgcucuucguauagUcgCGUCGCuGggGUg -3'
miRNA:   3'- -CCGUGCUCCGG---------------Aa-GCAGUGuCuuUAg -5'
24684 5' -51.2 NC_005264.1 + 45959 0.71 0.911522
Target:  5'- aGCACGAGGCUgcCGUCACGu----- -3'
miRNA:   3'- cCGUGCUCCGGaaGCAGUGUcuuuag -5'
24684 5' -51.2 NC_005264.1 + 147477 0.71 0.917536
Target:  5'- cGGCAcCGGGGCUagugUGUgGCAGAGGUUc -3'
miRNA:   3'- -CCGU-GCUCCGGaa--GCAgUGUCUUUAG- -5'
24684 5' -51.2 NC_005264.1 + 51781 0.71 0.917536
Target:  5'- cGCGCGGcGGCaCUUCGUC-CGGcGAGUCc -3'
miRNA:   3'- cCGUGCU-CCG-GAAGCAGuGUC-UUUAG- -5'
24684 5' -51.2 NC_005264.1 + 55078 0.7 0.923298
Target:  5'- uGUACGAGGCCaUUGaCGCGGAGGc- -3'
miRNA:   3'- cCGUGCUCCGGaAGCaGUGUCUUUag -5'
24684 5' -51.2 NC_005264.1 + 159291 0.7 0.934064
Target:  5'- uGGCACGAGagaugcuggacGCCgccgCGUCGCGGu--UCg -3'
miRNA:   3'- -CCGUGCUC-----------CGGaa--GCAGUGUCuuuAG- -5'
24684 5' -51.2 NC_005264.1 + 40264 0.7 0.934064
Target:  5'- uGGCACGAGagaugcuggacGCCgccgCGUCGCGGu--UCg -3'
miRNA:   3'- -CCGUGCUC-----------CGGaa--GCAGUGUCuuuAG- -5'
24684 5' -51.2 NC_005264.1 + 57880 0.7 0.934064
Target:  5'- cGGCACGGcGGCCaUgG-CGCGGAugAAUCg -3'
miRNA:   3'- -CCGUGCU-CCGGaAgCaGUGUCU--UUAG- -5'
24684 5' -51.2 NC_005264.1 + 95666 0.7 0.934064
Target:  5'- aGCGCuGcAGGCCgccauccaccccUUCGUCACAGGgaaGAUCg -3'
miRNA:   3'- cCGUG-C-UCCGG------------AAGCAGUGUCU---UUAG- -5'
24684 5' -51.2 NC_005264.1 + 17315 0.7 0.939068
Target:  5'- aGCGCGAGaCCUgccaaUGUCGCAGgcAUCa -3'
miRNA:   3'- cCGUGCUCcGGAa----GCAGUGUCuuUAG- -5'
24684 5' -51.2 NC_005264.1 + 42153 0.69 0.948326
Target:  5'- cGGCGCGAGGCCUU-GUUugGu----- -3'
miRNA:   3'- -CCGUGCUCCGGAAgCAGugUcuuuag -5'
24684 5' -51.2 NC_005264.1 + 114369 0.69 0.948326
Target:  5'- cGCGCGGGGCuacugauguccgCUUCGcCACAGAc--- -3'
miRNA:   3'- cCGUGCUCCG------------GAAGCaGUGUCUuuag -5'
24684 5' -51.2 NC_005264.1 + 25604 0.69 0.9566
Target:  5'- aGCGCcGGGCCggCGUUGCGGAAc-- -3'
miRNA:   3'- cCGUGcUCCGGaaGCAGUGUCUUuag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.