miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24684 5' -51.2 NC_005264.1 + 25604 0.69 0.9566
Target:  5'- aGCGCcGGGCCggCGUUGCGGAAc-- -3'
miRNA:   3'- cCGUGcUCCGGaaGCAGUGUCUUuag -5'
24684 5' -51.2 NC_005264.1 + 115051 0.69 0.960378
Target:  5'- cGGCGaaagcCGAGGUCUUCGU-GCAGGccAUCg -3'
miRNA:   3'- -CCGU-----GCUCCGGAAGCAgUGUCUu-UAG- -5'
24684 5' -51.2 NC_005264.1 + 79884 0.69 0.960378
Target:  5'- gGGCGCGGcGGCgacCGUCGCAGGcgacGUCg -3'
miRNA:   3'- -CCGUGCU-CCGgaaGCAGUGUCUu---UAG- -5'
24684 5' -51.2 NC_005264.1 + 27050 0.69 0.960378
Target:  5'- uGCACGGGGggucggggaauuCC-UCGUCGCAGAcagacaguGAUCu -3'
miRNA:   3'- cCGUGCUCC------------GGaAGCAGUGUCU--------UUAG- -5'
24684 5' -51.2 NC_005264.1 + 67998 0.69 0.960378
Target:  5'- aGGCACc-GGC--UCGUUGCGGggGUCg -3'
miRNA:   3'- -CCGUGcuCCGgaAGCAGUGUCuuUAG- -5'
24684 5' -51.2 NC_005264.1 + 48687 0.69 0.963922
Target:  5'- gGGCGCGA-GUCUgcUCGUCGCGGucgcUCg -3'
miRNA:   3'- -CCGUGCUcCGGA--AGCAGUGUCuuu-AG- -5'
24684 5' -51.2 NC_005264.1 + 147798 0.68 0.966917
Target:  5'- uGCGCGAcggaggugagguaGGCCUugUCGUCugGGGAcuUCa -3'
miRNA:   3'- cCGUGCU-------------CCGGA--AGCAGugUCUUu-AG- -5'
24684 5' -51.2 NC_005264.1 + 80266 0.68 0.967238
Target:  5'- gGGCgaGCGAGGCCgcuca-GCGGAGAUUa -3'
miRNA:   3'- -CCG--UGCUCCGGaagcagUGUCUUUAG- -5'
24684 5' -51.2 NC_005264.1 + 124066 0.68 0.970034
Target:  5'- cGGgACGAGGCacguaccCUUC-UgGCAGggGUCg -3'
miRNA:   3'- -CCgUGCUCCG-------GAAGcAgUGUCuuUAG- -5'
24684 5' -51.2 NC_005264.1 + 5039 0.68 0.970034
Target:  5'- cGGgACGAGGCacguaccCUUC-UgGCAGggGUCg -3'
miRNA:   3'- -CCgUGCUCCG-------GAAGcAgUGUCuuUAG- -5'
24684 5' -51.2 NC_005264.1 + 7952 0.68 0.970333
Target:  5'- cGGcCGCGGcGUCUUUGUCGCugccuAGAGGUCg -3'
miRNA:   3'- -CC-GUGCUcCGGAAGCAGUG-----UCUUUAG- -5'
24684 5' -51.2 NC_005264.1 + 69674 0.68 0.973213
Target:  5'- cGGCGCuGGGGCCUUgGUucucCGCGGuugcGUCc -3'
miRNA:   3'- -CCGUG-CUCCGGAAgCA----GUGUCuu--UAG- -5'
24684 5' -51.2 NC_005264.1 + 125261 0.68 0.975627
Target:  5'- cGGCcgccGCGAGacuugccGCCUcCGUCGCGGucGUCg -3'
miRNA:   3'- -CCG----UGCUC-------CGGAaGCAGUGUCuuUAG- -5'
24684 5' -51.2 NC_005264.1 + 6234 0.68 0.975627
Target:  5'- cGGCcgccGCGAGacuugccGCCUcCGUCGCGGucGUCg -3'
miRNA:   3'- -CCG----UGCUC-------CGGAaGCAGUGUCuuUAG- -5'
24684 5' -51.2 NC_005264.1 + 125581 0.68 0.978356
Target:  5'- cGGCAgGAGcGCC-UCGUcCACGGuGAUg -3'
miRNA:   3'- -CCGUgCUC-CGGaAGCA-GUGUCuUUAg -5'
24684 5' -51.2 NC_005264.1 + 6554 0.68 0.978356
Target:  5'- cGGCAgGAGcGCC-UCGUcCACGGuGAUg -3'
miRNA:   3'- -CCGUgCUC-CGGaAGCA-GUGUCuUUAg -5'
24684 5' -51.2 NC_005264.1 + 70195 0.67 0.980635
Target:  5'- cGGCGCGAgGGCCacgCG--GCAGGGAUg -3'
miRNA:   3'- -CCGUGCU-CCGGaa-GCagUGUCUUUAg -5'
24684 5' -51.2 NC_005264.1 + 1123 0.67 0.98273
Target:  5'- uGGCGCG-GGUCgUUGUgcaUGCGGggGUCg -3'
miRNA:   3'- -CCGUGCuCCGGaAGCA---GUGUCuuUAG- -5'
24684 5' -51.2 NC_005264.1 + 74309 0.67 0.984649
Target:  5'- uGGCGCGcggcauGGCCaacgagUCGUCGuCGGuGAUCu -3'
miRNA:   3'- -CCGUGCu-----CCGGa-----AGCAGU-GUCuUUAG- -5'
24684 5' -51.2 NC_005264.1 + 82424 0.67 0.984649
Target:  5'- uGGCG-GGGGCagcagcugUCGUCGCgguAGAAGUCc -3'
miRNA:   3'- -CCGUgCUCCGga------AGCAGUG---UCUUUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.