Results 21 - 40 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24684 | 5' | -51.2 | NC_005264.1 | + | 6554 | 0.68 | 0.978356 |
Target: 5'- cGGCAgGAGcGCC-UCGUcCACGGuGAUg -3' miRNA: 3'- -CCGUgCUC-CGGaAGCA-GUGUCuUUAg -5' |
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24684 | 5' | -51.2 | NC_005264.1 | + | 125581 | 0.68 | 0.978356 |
Target: 5'- cGGCAgGAGcGCC-UCGUcCACGGuGAUg -3' miRNA: 3'- -CCGUgCUC-CGGaAGCA-GUGUCuUUAg -5' |
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24684 | 5' | -51.2 | NC_005264.1 | + | 125261 | 0.68 | 0.975627 |
Target: 5'- cGGCcgccGCGAGacuugccGCCUcCGUCGCGGucGUCg -3' miRNA: 3'- -CCG----UGCUC-------CGGAaGCAGUGUCuuUAG- -5' |
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24684 | 5' | -51.2 | NC_005264.1 | + | 6234 | 0.68 | 0.975627 |
Target: 5'- cGGCcgccGCGAGacuugccGCCUcCGUCGCGGucGUCg -3' miRNA: 3'- -CCG----UGCUC-------CGGAaGCAGUGUCuuUAG- -5' |
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24684 | 5' | -51.2 | NC_005264.1 | + | 69674 | 0.68 | 0.973213 |
Target: 5'- cGGCGCuGGGGCCUUgGUucucCGCGGuugcGUCc -3' miRNA: 3'- -CCGUG-CUCCGGAAgCA----GUGUCuu--UAG- -5' |
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24684 | 5' | -51.2 | NC_005264.1 | + | 7952 | 0.68 | 0.970333 |
Target: 5'- cGGcCGCGGcGUCUUUGUCGCugccuAGAGGUCg -3' miRNA: 3'- -CC-GUGCUcCGGAAGCAGUG-----UCUUUAG- -5' |
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24684 | 5' | -51.2 | NC_005264.1 | + | 124066 | 0.68 | 0.970034 |
Target: 5'- cGGgACGAGGCacguaccCUUC-UgGCAGggGUCg -3' miRNA: 3'- -CCgUGCUCCG-------GAAGcAgUGUCuuUAG- -5' |
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24684 | 5' | -51.2 | NC_005264.1 | + | 5039 | 0.68 | 0.970034 |
Target: 5'- cGGgACGAGGCacguaccCUUC-UgGCAGggGUCg -3' miRNA: 3'- -CCgUGCUCCG-------GAAGcAgUGUCuuUAG- -5' |
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24684 | 5' | -51.2 | NC_005264.1 | + | 80266 | 0.68 | 0.967238 |
Target: 5'- gGGCgaGCGAGGCCgcuca-GCGGAGAUUa -3' miRNA: 3'- -CCG--UGCUCCGGaagcagUGUCUUUAG- -5' |
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24684 | 5' | -51.2 | NC_005264.1 | + | 147798 | 0.68 | 0.966917 |
Target: 5'- uGCGCGAcggaggugagguaGGCCUugUCGUCugGGGAcuUCa -3' miRNA: 3'- cCGUGCU-------------CCGGA--AGCAGugUCUUu-AG- -5' |
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24684 | 5' | -51.2 | NC_005264.1 | + | 48687 | 0.69 | 0.963922 |
Target: 5'- gGGCGCGA-GUCUgcUCGUCGCGGucgcUCg -3' miRNA: 3'- -CCGUGCUcCGGA--AGCAGUGUCuuu-AG- -5' |
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24684 | 5' | -51.2 | NC_005264.1 | + | 27050 | 0.69 | 0.960378 |
Target: 5'- uGCACGGGGggucggggaauuCC-UCGUCGCAGAcagacaguGAUCu -3' miRNA: 3'- cCGUGCUCC------------GGaAGCAGUGUCU--------UUAG- -5' |
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24684 | 5' | -51.2 | NC_005264.1 | + | 115051 | 0.69 | 0.960378 |
Target: 5'- cGGCGaaagcCGAGGUCUUCGU-GCAGGccAUCg -3' miRNA: 3'- -CCGU-----GCUCCGGAAGCAgUGUCUu-UAG- -5' |
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24684 | 5' | -51.2 | NC_005264.1 | + | 79884 | 0.69 | 0.960378 |
Target: 5'- gGGCGCGGcGGCgacCGUCGCAGGcgacGUCg -3' miRNA: 3'- -CCGUGCU-CCGgaaGCAGUGUCUu---UAG- -5' |
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24684 | 5' | -51.2 | NC_005264.1 | + | 67998 | 0.69 | 0.960378 |
Target: 5'- aGGCACc-GGC--UCGUUGCGGggGUCg -3' miRNA: 3'- -CCGUGcuCCGgaAGCAGUGUCuuUAG- -5' |
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24684 | 5' | -51.2 | NC_005264.1 | + | 25604 | 0.69 | 0.9566 |
Target: 5'- aGCGCcGGGCCggCGUUGCGGAAc-- -3' miRNA: 3'- cCGUGcUCCGGaaGCAGUGUCUUuag -5' |
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24684 | 5' | -51.2 | NC_005264.1 | + | 29629 | 0.69 | 0.9566 |
Target: 5'- cGCACGGGGUaaagaggUCGUCcagGCAGAaGAUCu -3' miRNA: 3'- cCGUGCUCCGga-----AGCAG---UGUCU-UUAG- -5' |
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24684 | 5' | -51.2 | NC_005264.1 | + | 42153 | 0.69 | 0.948326 |
Target: 5'- cGGCGCGAGGCCUU-GUUugGu----- -3' miRNA: 3'- -CCGUGCUCCGGAAgCAGugUcuuuag -5' |
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24684 | 5' | -51.2 | NC_005264.1 | + | 114369 | 0.69 | 0.948326 |
Target: 5'- cGCGCGGGGCuacugauguccgCUUCGcCACAGAc--- -3' miRNA: 3'- cCGUGCUCCG------------GAAGCaGUGUCUuuag -5' |
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24684 | 5' | -51.2 | NC_005264.1 | + | 17315 | 0.7 | 0.939068 |
Target: 5'- aGCGCGAGaCCUgccaaUGUCGCAGgcAUCa -3' miRNA: 3'- cCGUGCUCcGGAa----GCAGUGUCuuUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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