miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24684 5' -51.2 NC_005264.1 + 1123 0.67 0.98273
Target:  5'- uGGCGCG-GGUCgUUGUgcaUGCGGggGUCg -3'
miRNA:   3'- -CCGUGCuCCGGaAGCA---GUGUCuuUAG- -5'
24684 5' -51.2 NC_005264.1 + 2757 0.66 0.994757
Target:  5'- cGGCGCGucccccGGcGCCguacCGUCugGGGAGUg -3'
miRNA:   3'- -CCGUGC------UC-CGGaa--GCAGugUCUUUAg -5'
24684 5' -51.2 NC_005264.1 + 3682 0.73 0.820978
Target:  5'- uGGUGCGGGGCCUgg--CGCGGAAAg- -3'
miRNA:   3'- -CCGUGCUCCGGAagcaGUGUCUUUag -5'
24684 5' -51.2 NC_005264.1 + 5039 0.68 0.970034
Target:  5'- cGGgACGAGGCacguaccCUUC-UgGCAGggGUCg -3'
miRNA:   3'- -CCgUGCUCCG-------GAAGcAgUGUCuuUAG- -5'
24684 5' -51.2 NC_005264.1 + 6234 0.68 0.975627
Target:  5'- cGGCcgccGCGAGacuugccGCCUcCGUCGCGGucGUCg -3'
miRNA:   3'- -CCG----UGCUC-------CGGAaGCAGUGUCuuUAG- -5'
24684 5' -51.2 NC_005264.1 + 6554 0.68 0.978356
Target:  5'- cGGCAgGAGcGCC-UCGUcCACGGuGAUg -3'
miRNA:   3'- -CCGUgCUC-CGGaAGCA-GUGUCuUUAg -5'
24684 5' -51.2 NC_005264.1 + 7952 0.68 0.970333
Target:  5'- cGGcCGCGGcGUCUUUGUCGCugccuAGAGGUCg -3'
miRNA:   3'- -CC-GUGCUcCGGAAGCAGUG-----UCUUUAG- -5'
24684 5' -51.2 NC_005264.1 + 13905 0.66 0.993921
Target:  5'- aGGCgACGGGGCgCgaaCGUC-CAGGAggCa -3'
miRNA:   3'- -CCG-UGCUCCG-Gaa-GCAGuGUCUUuaG- -5'
24684 5' -51.2 NC_005264.1 + 16762 0.66 0.994757
Target:  5'- cGGUAgCGAGGUCccgaUCGUCGcCGGcgGUCu -3'
miRNA:   3'- -CCGU-GCUCCGGa---AGCAGU-GUCuuUAG- -5'
24684 5' -51.2 NC_005264.1 + 17315 0.7 0.939068
Target:  5'- aGCGCGAGaCCUgccaaUGUCGCAGgcAUCa -3'
miRNA:   3'- cCGUGCUCcGGAa----GCAGUGUCuuUAG- -5'
24684 5' -51.2 NC_005264.1 + 18313 0.66 0.994757
Target:  5'- uGCGCGAGGCCgucCGUCuauuGcuAUCu -3'
miRNA:   3'- cCGUGCUCCGGaa-GCAGugu-CuuUAG- -5'
24684 5' -51.2 NC_005264.1 + 19443 0.66 0.994009
Target:  5'- aGGCGCGAGGCgCUcaUCGgcaccaguauaugcgCGCGGGu--- -3'
miRNA:   3'- -CCGUGCUCCG-GA--AGCa--------------GUGUCUuuag -5'
24684 5' -51.2 NC_005264.1 + 24885 0.72 0.873304
Target:  5'- cGGCACGAGGCUucgcucuucguauagUcgCGUCGCuGggGUg -3'
miRNA:   3'- -CCGUGCUCCGG---------------Aa-GCAGUGuCuuUAg -5'
24684 5' -51.2 NC_005264.1 + 25604 0.69 0.9566
Target:  5'- aGCGCcGGGCCggCGUUGCGGAAc-- -3'
miRNA:   3'- cCGUGcUCCGGaaGCAGUGUCUUuag -5'
24684 5' -51.2 NC_005264.1 + 27050 0.69 0.960378
Target:  5'- uGCACGGGGggucggggaauuCC-UCGUCGCAGAcagacaguGAUCu -3'
miRNA:   3'- cCGUGCUCC------------GGaAGCAGUGUCU--------UUAG- -5'
24684 5' -51.2 NC_005264.1 + 29629 0.69 0.9566
Target:  5'- cGCACGGGGUaaagaggUCGUCcagGCAGAaGAUCu -3'
miRNA:   3'- cCGUGCUCCGga-----AGCAG---UGUCU-UUAG- -5'
24684 5' -51.2 NC_005264.1 + 40264 0.7 0.934064
Target:  5'- uGGCACGAGagaugcuggacGCCgccgCGUCGCGGu--UCg -3'
miRNA:   3'- -CCGUGCUC-----------CGGaa--GCAGUGUCuuuAG- -5'
24684 5' -51.2 NC_005264.1 + 42153 0.69 0.948326
Target:  5'- cGGCGCGAGGCCUU-GUUugGu----- -3'
miRNA:   3'- -CCGUGCUCCGGAAgCAGugUcuuuag -5'
24684 5' -51.2 NC_005264.1 + 45959 0.71 0.911522
Target:  5'- aGCACGAGGCUgcCGUCACGu----- -3'
miRNA:   3'- cCGUGCUCCGGaaGCAGUGUcuuuag -5'
24684 5' -51.2 NC_005264.1 + 48687 0.69 0.963922
Target:  5'- gGGCGCGA-GUCUgcUCGUCGCGGucgcUCg -3'
miRNA:   3'- -CCGUGCUcCGGA--AGCAGUGUCuuu-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.