miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24684 5' -51.2 NC_005264.1 + 50952 0.78 0.568823
Target:  5'- cGCGCGuGGCCUUCGuUCAUGGGAAg- -3'
miRNA:   3'- cCGUGCuCCGGAAGC-AGUGUCUUUag -5'
24684 5' -51.2 NC_005264.1 + 51781 0.71 0.917536
Target:  5'- cGCGCGGcGGCaCUUCGUC-CGGcGAGUCc -3'
miRNA:   3'- cCGUGCU-CCG-GAAGCAGuGUC-UUUAG- -5'
24684 5' -51.2 NC_005264.1 + 55078 0.7 0.923298
Target:  5'- uGUACGAGGCCaUUGaCGCGGAGGc- -3'
miRNA:   3'- cCGUGCUCCGGaAGCaGUGUCUUUag -5'
24684 5' -51.2 NC_005264.1 + 55351 0.74 0.793765
Target:  5'- -uCGCGGcGGCCUUCGUCACAGc---- -3'
miRNA:   3'- ccGUGCU-CCGGAAGCAGUGUCuuuag -5'
24684 5' -51.2 NC_005264.1 + 57880 0.7 0.934064
Target:  5'- cGGCACGGcGGCCaUgG-CGCGGAugAAUCg -3'
miRNA:   3'- -CCGUGCU-CCGGaAgCaGUGUCU--UUAG- -5'
24684 5' -51.2 NC_005264.1 + 67998 0.69 0.960378
Target:  5'- aGGCACc-GGC--UCGUUGCGGggGUCg -3'
miRNA:   3'- -CCGUGcuCCGgaAGCAGUGUCuuUAG- -5'
24684 5' -51.2 NC_005264.1 + 69674 0.68 0.973213
Target:  5'- cGGCGCuGGGGCCUUgGUucucCGCGGuugcGUCc -3'
miRNA:   3'- -CCGUG-CUCCGGAAgCA----GUGUCuu--UAG- -5'
24684 5' -51.2 NC_005264.1 + 70195 0.67 0.980635
Target:  5'- cGGCGCGAgGGCCacgCG--GCAGGGAUg -3'
miRNA:   3'- -CCGUGCU-CCGGaa-GCagUGUCUUUAg -5'
24684 5' -51.2 NC_005264.1 + 72316 0.66 0.992979
Target:  5'- uGGCguugGCGGuuuGGCCUUCGUCGauggccgAGAcGUCa -3'
miRNA:   3'- -CCG----UGCU---CCGGAAGCAGUg------UCUuUAG- -5'
24684 5' -51.2 NC_005264.1 + 73609 0.67 0.987997
Target:  5'- gGGC-CGcAGGCCUgcugggCGUUACAGuuuUCc -3'
miRNA:   3'- -CCGuGC-UCCGGAa-----GCAGUGUCuuuAG- -5'
24684 5' -51.2 NC_005264.1 + 74309 0.67 0.984649
Target:  5'- uGGCGCGcggcauGGCCaacgagUCGUCGuCGGuGAUCu -3'
miRNA:   3'- -CCGUGCu-----CCGGa-----AGCAGU-GUCuUUAG- -5'
24684 5' -51.2 NC_005264.1 + 77984 0.66 0.989443
Target:  5'- uGGCGCGAgauacgaaGGCCg-CGaUCGCGGGcGAUCa -3'
miRNA:   3'- -CCGUGCU--------CCGGaaGC-AGUGUCU-UUAG- -5'
24684 5' -51.2 NC_005264.1 + 79440 0.67 0.987997
Target:  5'- cGGUGCGGGGUCUcCGgggGCAGAuuAUCu -3'
miRNA:   3'- -CCGUGCUCCGGAaGCag-UGUCUu-UAG- -5'
24684 5' -51.2 NC_005264.1 + 79884 0.69 0.960378
Target:  5'- gGGCGCGGcGGCgacCGUCGCAGGcgacGUCg -3'
miRNA:   3'- -CCGUGCU-CCGgaaGCAGUGUCUu---UAG- -5'
24684 5' -51.2 NC_005264.1 + 80266 0.68 0.967238
Target:  5'- gGGCgaGCGAGGCCgcuca-GCGGAGAUUa -3'
miRNA:   3'- -CCG--UGCUCCGGaagcagUGUCUUUAG- -5'
24684 5' -51.2 NC_005264.1 + 81848 0.66 0.990749
Target:  5'- aGGCG-GAGGCCacgucggCGUCGaggaAGAAAUUg -3'
miRNA:   3'- -CCGUgCUCCGGaa-----GCAGUg---UCUUUAG- -5'
24684 5' -51.2 NC_005264.1 + 82424 0.67 0.984649
Target:  5'- uGGCG-GGGGCagcagcugUCGUCGCgguAGAAGUCc -3'
miRNA:   3'- -CCGUgCUCCGga------AGCAGUG---UCUUUAG- -5'
24684 5' -51.2 NC_005264.1 + 91570 0.83 0.337267
Target:  5'- gGGCACGAGGCU--UGUCGCGGAGcUCa -3'
miRNA:   3'- -CCGUGCUCCGGaaGCAGUGUCUUuAG- -5'
24684 5' -51.2 NC_005264.1 + 95666 0.7 0.934064
Target:  5'- aGCGCuGcAGGCCgccauccaccccUUCGUCACAGGgaaGAUCg -3'
miRNA:   3'- cCGUG-C-UCCGG------------AAGCAGUGUCU---UUAG- -5'
24684 5' -51.2 NC_005264.1 + 100738 0.66 0.994757
Target:  5'- gGGCGCuggucGAGcucGCCgaggCGUCacgACAGAAAUCg -3'
miRNA:   3'- -CCGUG-----CUC---CGGaa--GCAG---UGUCUUUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.