miRNA display CGI


Results 1 - 20 of 56 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24684 5' -51.2 NC_005264.1 + 159291 0.7 0.934064
Target:  5'- uGGCACGAGagaugcuggacGCCgccgCGUCGCGGu--UCg -3'
miRNA:   3'- -CCGUGCUC-----------CGGaa--GCAGUGUCuuuAG- -5'
24684 5' -51.2 NC_005264.1 + 151352 0.74 0.784373
Target:  5'- gGGcCGCGcGGCCUUCGUUAUGGGcaGGUCc -3'
miRNA:   3'- -CC-GUGCuCCGGAAGCAGUGUCU--UUAG- -5'
24684 5' -51.2 NC_005264.1 + 147798 0.68 0.966917
Target:  5'- uGCGCGAcggaggugagguaGGCCUugUCGUCugGGGAcuUCa -3'
miRNA:   3'- cCGUGCU-------------CCGGA--AGCAGugUCUUu-AG- -5'
24684 5' -51.2 NC_005264.1 + 147477 0.71 0.917536
Target:  5'- cGGCAcCGGGGCUagugUGUgGCAGAGGUUc -3'
miRNA:   3'- -CCGU-GCUCCGGaa--GCAgUGUCUUUAG- -5'
24684 5' -51.2 NC_005264.1 + 137410 0.66 0.991925
Target:  5'- aGGCACGaAGGCCaaUCGUaucgccuggCGCAcGAGAUa -3'
miRNA:   3'- -CCGUGC-UCCGGa-AGCA---------GUGU-CUUUAg -5'
24684 5' -51.2 NC_005264.1 + 125581 0.68 0.978356
Target:  5'- cGGCAgGAGcGCC-UCGUcCACGGuGAUg -3'
miRNA:   3'- -CCGUgCUC-CGGaAGCA-GUGUCuUUAg -5'
24684 5' -51.2 NC_005264.1 + 125261 0.68 0.975627
Target:  5'- cGGCcgccGCGAGacuugccGCCUcCGUCGCGGucGUCg -3'
miRNA:   3'- -CCG----UGCUC-------CGGAaGCAGUGUCuuUAG- -5'
24684 5' -51.2 NC_005264.1 + 124066 0.68 0.970034
Target:  5'- cGGgACGAGGCacguaccCUUC-UgGCAGggGUCg -3'
miRNA:   3'- -CCgUGCUCCG-------GAAGcAgUGUCuuUAG- -5'
24684 5' -51.2 NC_005264.1 + 121783 0.66 0.994757
Target:  5'- cGGCGCGucccccGGcGCCguacCGUCugGGGAGUg -3'
miRNA:   3'- -CCGUGC------UC-CGGaa--GCAGugUCUUUAg -5'
24684 5' -51.2 NC_005264.1 + 116289 0.67 0.987535
Target:  5'- uGGCGCGGgcggcuacggcuguGGCCUUCG--ACGGGAAc- -3'
miRNA:   3'- -CCGUGCU--------------CCGGAAGCagUGUCUUUag -5'
24684 5' -51.2 NC_005264.1 + 115283 1.12 0.00561
Target:  5'- uGGCACGAGGCCUUCGUCACAGAAAUCu -3'
miRNA:   3'- -CCGUGCUCCGGAAGCAGUGUCUUUAG- -5'
24684 5' -51.2 NC_005264.1 + 115051 0.69 0.960378
Target:  5'- cGGCGaaagcCGAGGUCUUCGU-GCAGGccAUCg -3'
miRNA:   3'- -CCGU-----GCUCCGGAAGCAgUGUCUu-UAG- -5'
24684 5' -51.2 NC_005264.1 + 114693 0.66 0.992979
Target:  5'- gGGCAacgugUGAGGgg-UCGUCGCAGuAGUCc -3'
miRNA:   3'- -CCGU-----GCUCCggaAGCAGUGUCuUUAG- -5'
24684 5' -51.2 NC_005264.1 + 114369 0.69 0.948326
Target:  5'- cGCGCGGGGCuacugauguccgCUUCGcCACAGAc--- -3'
miRNA:   3'- cCGUGCUCCG------------GAAGCaGUGUCUuuag -5'
24684 5' -51.2 NC_005264.1 + 108610 0.74 0.793765
Target:  5'- cGCGCGGGGCCgccUCGaCACAGGccUCu -3'
miRNA:   3'- cCGUGCUCCGGa--AGCaGUGUCUuuAG- -5'
24684 5' -51.2 NC_005264.1 + 103252 0.66 0.994757
Target:  5'- -uCACGuauaguGGCCUUCuucugCGCGGAGGUCc -3'
miRNA:   3'- ccGUGCu-----CCGGAAGca---GUGUCUUUAG- -5'
24684 5' -51.2 NC_005264.1 + 100738 0.66 0.994757
Target:  5'- gGGCGCuggucGAGcucGCCgaggCGUCacgACAGAAAUCg -3'
miRNA:   3'- -CCGUG-----CUC---CGGaa--GCAG---UGUCUUUAG- -5'
24684 5' -51.2 NC_005264.1 + 95666 0.7 0.934064
Target:  5'- aGCGCuGcAGGCCgccauccaccccUUCGUCACAGGgaaGAUCg -3'
miRNA:   3'- cCGUG-C-UCCGG------------AAGCAGUGUCU---UUAG- -5'
24684 5' -51.2 NC_005264.1 + 91570 0.83 0.337267
Target:  5'- gGGCACGAGGCU--UGUCGCGGAGcUCa -3'
miRNA:   3'- -CCGUGCUCCGGaaGCAGUGUCUUuAG- -5'
24684 5' -51.2 NC_005264.1 + 82424 0.67 0.984649
Target:  5'- uGGCG-GGGGCagcagcugUCGUCGCgguAGAAGUCc -3'
miRNA:   3'- -CCGUgCUCCGga------AGCAGUG---UCUUUAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.