miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24684 5' -51.2 NC_005264.1 + 115283 1.12 0.00561
Target:  5'- uGGCACGAGGCCUUCGUCACAGAAAUCu -3'
miRNA:   3'- -CCGUGCUCCGGAAGCAGUGUCUUUAG- -5'
24684 5' -51.2 NC_005264.1 + 1123 0.67 0.98273
Target:  5'- uGGCGCG-GGUCgUUGUgcaUGCGGggGUCg -3'
miRNA:   3'- -CCGUGCuCCGGaAGCA---GUGUCuuUAG- -5'
24684 5' -51.2 NC_005264.1 + 13905 0.66 0.993921
Target:  5'- aGGCgACGGGGCgCgaaCGUC-CAGGAggCa -3'
miRNA:   3'- -CCG-UGCUCCG-Gaa-GCAGuGUCUUuaG- -5'
24684 5' -51.2 NC_005264.1 + 121783 0.66 0.994757
Target:  5'- cGGCGCGucccccGGcGCCguacCGUCugGGGAGUg -3'
miRNA:   3'- -CCGUGC------UC-CGGaa--GCAGugUCUUUAg -5'
24684 5' -51.2 NC_005264.1 + 24885 0.72 0.873304
Target:  5'- cGGCACGAGGCUucgcucuucguauagUcgCGUCGCuGggGUg -3'
miRNA:   3'- -CCGUGCUCCGG---------------Aa-GCAGUGuCuuUAg -5'
24684 5' -51.2 NC_005264.1 + 147477 0.71 0.917536
Target:  5'- cGGCAcCGGGGCUagugUGUgGCAGAGGUUc -3'
miRNA:   3'- -CCGU-GCUCCGGaa--GCAgUGUCUUUAG- -5'
24684 5' -51.2 NC_005264.1 + 159291 0.7 0.934064
Target:  5'- uGGCACGAGagaugcuggacGCCgccgCGUCGCGGu--UCg -3'
miRNA:   3'- -CCGUGCUC-----------CGGaa--GCAGUGUCuuuAG- -5'
24684 5' -51.2 NC_005264.1 + 114369 0.69 0.948326
Target:  5'- cGCGCGGGGCuacugauguccgCUUCGcCACAGAc--- -3'
miRNA:   3'- cCGUGCUCCG------------GAAGCaGUGUCUuuag -5'
24684 5' -51.2 NC_005264.1 + 115051 0.69 0.960378
Target:  5'- cGGCGaaagcCGAGGUCUUCGU-GCAGGccAUCg -3'
miRNA:   3'- -CCGU-----GCUCCGGAAGCAgUGUCUu-UAG- -5'
24684 5' -51.2 NC_005264.1 + 125581 0.68 0.978356
Target:  5'- cGGCAgGAGcGCC-UCGUcCACGGuGAUg -3'
miRNA:   3'- -CCGUgCUC-CGGaAGCA-GUGUCuUUAg -5'
24684 5' -51.2 NC_005264.1 + 124066 0.68 0.970034
Target:  5'- cGGgACGAGGCacguaccCUUC-UgGCAGggGUCg -3'
miRNA:   3'- -CCgUGCUCCG-------GAAGcAgUGUCuuUAG- -5'
24684 5' -51.2 NC_005264.1 + 29629 0.69 0.9566
Target:  5'- cGCACGGGGUaaagaggUCGUCcagGCAGAaGAUCu -3'
miRNA:   3'- cCGUGCUCCGga-----AGCAG---UGUCU-UUAG- -5'
24684 5' -51.2 NC_005264.1 + 55351 0.74 0.793765
Target:  5'- -uCGCGGcGGCCUUCGUCACAGc---- -3'
miRNA:   3'- ccGUGCU-CCGGAAGCAGUGUCuuuag -5'
24684 5' -51.2 NC_005264.1 + 7952 0.68 0.970333
Target:  5'- cGGcCGCGGcGUCUUUGUCGCugccuAGAGGUCg -3'
miRNA:   3'- -CC-GUGCUcCGGAAGCAGUG-----UCUUUAG- -5'
24684 5' -51.2 NC_005264.1 + 108610 0.74 0.793765
Target:  5'- cGCGCGGGGCCgccUCGaCACAGGccUCu -3'
miRNA:   3'- cCGUGCUCCGGa--AGCaGUGUCUuuAG- -5'
24684 5' -51.2 NC_005264.1 + 42153 0.69 0.948326
Target:  5'- cGGCGCGAGGCCUU-GUUugGu----- -3'
miRNA:   3'- -CCGUGCUCCGGAAgCAGugUcuuuag -5'
24684 5' -51.2 NC_005264.1 + 125261 0.68 0.975627
Target:  5'- cGGCcgccGCGAGacuugccGCCUcCGUCGCGGucGUCg -3'
miRNA:   3'- -CCG----UGCUC-------CGGAaGCAGUGUCuuUAG- -5'
24684 5' -51.2 NC_005264.1 + 114693 0.66 0.992979
Target:  5'- gGGCAacgugUGAGGgg-UCGUCGCAGuAGUCc -3'
miRNA:   3'- -CCGU-----GCUCCggaAGCAGUGUCuUUAG- -5'
24684 5' -51.2 NC_005264.1 + 3682 0.73 0.820978
Target:  5'- uGGUGCGGGGCCUgg--CGCGGAAAg- -3'
miRNA:   3'- -CCGUGCUCCGGAagcaGUGUCUUUag -5'
24684 5' -51.2 NC_005264.1 + 55078 0.7 0.923298
Target:  5'- uGUACGAGGCCaUUGaCGCGGAGGc- -3'
miRNA:   3'- cCGUGCUCCGGaAGCaGUGUCUUUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.