miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24684 5' -51.2 NC_005264.1 + 103252 0.66 0.994757
Target:  5'- -uCACGuauaguGGCCUUCuucugCGCGGAGGUCc -3'
miRNA:   3'- ccGUGCu-----CCGGAAGca---GUGUCUUUAG- -5'
24684 5' -51.2 NC_005264.1 + 55078 0.7 0.923298
Target:  5'- uGUACGAGGCCaUUGaCGCGGAGGc- -3'
miRNA:   3'- cCGUGCUCCGGaAGCaGUGUCUUUag -5'
24684 5' -51.2 NC_005264.1 + 40264 0.7 0.934064
Target:  5'- uGGCACGAGagaugcuggacGCCgccgCGUCGCGGu--UCg -3'
miRNA:   3'- -CCGUGCUC-----------CGGaa--GCAGUGUCuuuAG- -5'
24684 5' -51.2 NC_005264.1 + 51781 0.71 0.917536
Target:  5'- cGCGCGGcGGCaCUUCGUC-CGGcGAGUCc -3'
miRNA:   3'- cCGUGCU-CCG-GAAGCAGuGUC-UUUAG- -5'
24684 5' -51.2 NC_005264.1 + 72316 0.66 0.992979
Target:  5'- uGGCguugGCGGuuuGGCCUUCGUCGauggccgAGAcGUCa -3'
miRNA:   3'- -CCG----UGCU---CCGGAAGCAGUg------UCUuUAG- -5'
24684 5' -51.2 NC_005264.1 + 45959 0.71 0.911522
Target:  5'- aGCACGAGGCUgcCGUCACGu----- -3'
miRNA:   3'- cCGUGCUCCGGaaGCAGUGUcuuuag -5'
24684 5' -51.2 NC_005264.1 + 57880 0.7 0.934064
Target:  5'- cGGCACGGcGGCCaUgG-CGCGGAugAAUCg -3'
miRNA:   3'- -CCGUGCU-CCGGaAgCaGUGUCU--UUAG- -5'
24684 5' -51.2 NC_005264.1 + 95666 0.7 0.934064
Target:  5'- aGCGCuGcAGGCCgccauccaccccUUCGUCACAGGgaaGAUCg -3'
miRNA:   3'- cCGUG-C-UCCGG------------AAGCAGUGUCU---UUAG- -5'
24684 5' -51.2 NC_005264.1 + 137410 0.66 0.991925
Target:  5'- aGGCACGaAGGCCaaUCGUaucgccuggCGCAcGAGAUa -3'
miRNA:   3'- -CCGUGC-UCCGGa-AGCA---------GUGU-CUUUAg -5'
24684 5' -51.2 NC_005264.1 + 73609 0.67 0.987997
Target:  5'- gGGC-CGcAGGCCUgcugggCGUUACAGuuuUCc -3'
miRNA:   3'- -CCGuGC-UCCGGAa-----GCAGUGUCuuuAG- -5'
24684 5' -51.2 NC_005264.1 + 116289 0.67 0.987535
Target:  5'- uGGCGCGGgcggcuacggcuguGGCCUUCG--ACGGGAAc- -3'
miRNA:   3'- -CCGUGCU--------------CCGGAAGCagUGUCUUUag -5'
24684 5' -51.2 NC_005264.1 + 82424 0.67 0.984649
Target:  5'- uGGCG-GGGGCagcagcugUCGUCGCgguAGAAGUCc -3'
miRNA:   3'- -CCGUgCUCCGga------AGCAGUG---UCUUUAG- -5'
24684 5' -51.2 NC_005264.1 + 74309 0.67 0.984649
Target:  5'- uGGCGCGcggcauGGCCaacgagUCGUCGuCGGuGAUCu -3'
miRNA:   3'- -CCGUGCu-----CCGGa-----AGCAGU-GUCuUUAG- -5'
24684 5' -51.2 NC_005264.1 + 70195 0.67 0.980635
Target:  5'- cGGCGCGAgGGCCacgCG--GCAGGGAUg -3'
miRNA:   3'- -CCGUGCU-CCGGaa-GCagUGUCUUUAg -5'
24684 5' -51.2 NC_005264.1 + 48687 0.69 0.963922
Target:  5'- gGGCGCGA-GUCUgcUCGUCGCGGucgcUCg -3'
miRNA:   3'- -CCGUGCUcCGGA--AGCAGUGUCuuu-AG- -5'
24684 5' -51.2 NC_005264.1 + 79884 0.69 0.960378
Target:  5'- gGGCGCGGcGGCgacCGUCGCAGGcgacGUCg -3'
miRNA:   3'- -CCGUGCU-CCGgaaGCAGUGUCUu---UAG- -5'
24684 5' -51.2 NC_005264.1 + 27050 0.69 0.960378
Target:  5'- uGCACGGGGggucggggaauuCC-UCGUCGCAGAcagacaguGAUCu -3'
miRNA:   3'- cCGUGCUCC------------GGaAGCAGUGUCU--------UUAG- -5'
24684 5' -51.2 NC_005264.1 + 67998 0.69 0.960378
Target:  5'- aGGCACc-GGC--UCGUUGCGGggGUCg -3'
miRNA:   3'- -CCGUGcuCCGgaAGCAGUGUCuuUAG- -5'
24684 5' -51.2 NC_005264.1 + 25604 0.69 0.9566
Target:  5'- aGCGCcGGGCCggCGUUGCGGAAc-- -3'
miRNA:   3'- cCGUGcUCCGGaaGCAGUGUCUUuag -5'
24684 5' -51.2 NC_005264.1 + 17315 0.7 0.939068
Target:  5'- aGCGCGAGaCCUgccaaUGUCGCAGgcAUCa -3'
miRNA:   3'- cCGUGCUCcGGAa----GCAGUGUCuuUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.