miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24684 5' -51.2 NC_005264.1 + 48687 0.69 0.963922
Target:  5'- gGGCGCGA-GUCUgcUCGUCGCGGucgcUCg -3'
miRNA:   3'- -CCGUGCUcCGGA--AGCAGUGUCuuu-AG- -5'
24684 5' -51.2 NC_005264.1 + 82424 0.67 0.984649
Target:  5'- uGGCG-GGGGCagcagcugUCGUCGCgguAGAAGUCc -3'
miRNA:   3'- -CCGUgCUCCGga------AGCAGUG---UCUUUAG- -5'
24684 5' -51.2 NC_005264.1 + 74309 0.67 0.984649
Target:  5'- uGGCGCGcggcauGGCCaacgagUCGUCGuCGGuGAUCu -3'
miRNA:   3'- -CCGUGCu-----CCGGa-----AGCAGU-GUCuUUAG- -5'
24684 5' -51.2 NC_005264.1 + 70195 0.67 0.980635
Target:  5'- cGGCGCGAgGGCCacgCG--GCAGGGAUg -3'
miRNA:   3'- -CCGUGCU-CCGGaa-GCagUGUCUUUAg -5'
24684 5' -51.2 NC_005264.1 + 6554 0.68 0.978356
Target:  5'- cGGCAgGAGcGCC-UCGUcCACGGuGAUg -3'
miRNA:   3'- -CCGUgCUC-CGGaAGCA-GUGUCuUUAg -5'
24684 5' -51.2 NC_005264.1 + 6234 0.68 0.975627
Target:  5'- cGGCcgccGCGAGacuugccGCCUcCGUCGCGGucGUCg -3'
miRNA:   3'- -CCG----UGCUC-------CGGAaGCAGUGUCuuUAG- -5'
24684 5' -51.2 NC_005264.1 + 69674 0.68 0.973213
Target:  5'- cGGCGCuGGGGCCUUgGUucucCGCGGuugcGUCc -3'
miRNA:   3'- -CCGUG-CUCCGGAAgCA----GUGUCuu--UAG- -5'
24684 5' -51.2 NC_005264.1 + 5039 0.68 0.970034
Target:  5'- cGGgACGAGGCacguaccCUUC-UgGCAGggGUCg -3'
miRNA:   3'- -CCgUGCUCCG-------GAAGcAgUGUCuuUAG- -5'
24684 5' -51.2 NC_005264.1 + 147798 0.68 0.966917
Target:  5'- uGCGCGAcggaggugagguaGGCCUugUCGUCugGGGAcuUCa -3'
miRNA:   3'- cCGUGCU-------------CCGGA--AGCAGugUCUUu-AG- -5'
24684 5' -51.2 NC_005264.1 + 116289 0.67 0.987535
Target:  5'- uGGCGCGGgcggcuacggcuguGGCCUUCG--ACGGGAAc- -3'
miRNA:   3'- -CCGUGCU--------------CCGGAAGCagUGUCUUUag -5'
24684 5' -51.2 NC_005264.1 + 73609 0.67 0.987997
Target:  5'- gGGC-CGcAGGCCUgcugggCGUUACAGuuuUCc -3'
miRNA:   3'- -CCGuGC-UCCGGAa-----GCAGUGUCuuuAG- -5'
24684 5' -51.2 NC_005264.1 + 79440 0.67 0.987997
Target:  5'- cGGUGCGGGGUCUcCGgggGCAGAuuAUCu -3'
miRNA:   3'- -CCGUGCUCCGGAaGCag-UGUCUu-UAG- -5'
24684 5' -51.2 NC_005264.1 + 2757 0.66 0.994757
Target:  5'- cGGCGCGucccccGGcGCCguacCGUCugGGGAGUg -3'
miRNA:   3'- -CCGUGC------UC-CGGaa--GCAGugUCUUUAg -5'
24684 5' -51.2 NC_005264.1 + 100738 0.66 0.994757
Target:  5'- gGGCGCuggucGAGcucGCCgaggCGUCacgACAGAAAUCg -3'
miRNA:   3'- -CCGUG-----CUC---CGGaa--GCAG---UGUCUUUAG- -5'
24684 5' -51.2 NC_005264.1 + 16762 0.66 0.994757
Target:  5'- cGGUAgCGAGGUCccgaUCGUCGcCGGcgGUCu -3'
miRNA:   3'- -CCGU-GCUCCGGa---AGCAGU-GUCuuUAG- -5'
24684 5' -51.2 NC_005264.1 + 19443 0.66 0.994009
Target:  5'- aGGCGCGAGGCgCUcaUCGgcaccaguauaugcgCGCGGGu--- -3'
miRNA:   3'- -CCGUGCUCCG-GA--AGCa--------------GUGUCUuuag -5'
24684 5' -51.2 NC_005264.1 + 72316 0.66 0.992979
Target:  5'- uGGCguugGCGGuuuGGCCUUCGUCGauggccgAGAcGUCa -3'
miRNA:   3'- -CCG----UGCU---CCGGAAGCAGUg------UCUuUAG- -5'
24684 5' -51.2 NC_005264.1 + 137410 0.66 0.991925
Target:  5'- aGGCACGaAGGCCaaUCGUaucgccuggCGCAcGAGAUa -3'
miRNA:   3'- -CCGUGC-UCCGGa-AGCA---------GUGU-CUUUAg -5'
24684 5' -51.2 NC_005264.1 + 81848 0.66 0.990749
Target:  5'- aGGCG-GAGGCCacgucggCGUCGaggaAGAAAUUg -3'
miRNA:   3'- -CCGUgCUCCGGaa-----GCAGUg---UCUUUAG- -5'
24684 5' -51.2 NC_005264.1 + 77984 0.66 0.989443
Target:  5'- uGGCGCGAgauacgaaGGCCg-CGaUCGCGGGcGAUCa -3'
miRNA:   3'- -CCGUGCU--------CCGGaaGC-AGUGUCU-UUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.