miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24686 3' -54.7 NC_005264.1 + 144533 0.66 0.956827
Target:  5'- --aGACGGaCGGCCUCGcGCaacGACGa -3'
miRNA:   3'- gcaCUGCC-GUCGGAGCaCGaguUUGC- -5'
24686 3' -54.7 NC_005264.1 + 13499 0.66 0.956827
Target:  5'- gCGggGAUGGCGGUaaaUCGUccaaCUCGAACGg -3'
miRNA:   3'- -GCa-CUGCCGUCGg--AGCAc---GAGUUUGC- -5'
24686 3' -54.7 NC_005264.1 + 40530 0.66 0.952937
Target:  5'- gGUGACGGUGGUgaUGUGCUUGuaauacAGCGu -3'
miRNA:   3'- gCACUGCCGUCGgaGCACGAGU------UUGC- -5'
24686 3' -54.7 NC_005264.1 + 5285 0.66 0.952937
Target:  5'- aCGgcggGGCGGCGGCUgaccCGUGgggCGGGCGa -3'
miRNA:   3'- -GCa---CUGCCGUCGGa---GCACga-GUUUGC- -5'
24686 3' -54.7 NC_005264.1 + 10214 0.66 0.952937
Target:  5'- aGUuuuCGGCcucgcuGGCCUCGgGCUCAAuaGCGg -3'
miRNA:   3'- gCAcu-GCCG------UCGGAGCaCGAGUU--UGC- -5'
24686 3' -54.7 NC_005264.1 + 124312 0.66 0.952937
Target:  5'- aCGgcggGGCGGCGGCUgaccCGUGgggCGGGCGa -3'
miRNA:   3'- -GCa---CUGCCGUCGGa---GCACga-GUUUGC- -5'
24686 3' -54.7 NC_005264.1 + 126891 0.66 0.948817
Target:  5'- uGUGGgGGCGGCgUCG-GCgcccCAGAUGc -3'
miRNA:   3'- gCACUgCCGUCGgAGCaCGa---GUUUGC- -5'
24686 3' -54.7 NC_005264.1 + 7865 0.66 0.948817
Target:  5'- uGUGGgGGCGGCgUCG-GCgcccCAGAUGc -3'
miRNA:   3'- gCACUgCCGUCGgAGCaCGa---GUUUGC- -5'
24686 3' -54.7 NC_005264.1 + 29706 0.66 0.939878
Target:  5'- aCGaGugGGUuuugcGCCUgGUGCUCAGAa- -3'
miRNA:   3'- -GCaCugCCGu----CGGAgCACGAGUUUgc -5'
24686 3' -54.7 NC_005264.1 + 103738 0.67 0.934558
Target:  5'- --cGGCGGCGGCCgccaugcuuagguUCaUGCUgAGGCGg -3'
miRNA:   3'- gcaCUGCCGUCGG-------------AGcACGAgUUUGC- -5'
24686 3' -54.7 NC_005264.1 + 42436 0.67 0.929991
Target:  5'- gCGUucGGCGcuGCGGCaCUCGcGCUCGAAUGu -3'
miRNA:   3'- -GCA--CUGC--CGUCG-GAGCaCGAGUUUGC- -5'
24686 3' -54.7 NC_005264.1 + 67725 0.67 0.919147
Target:  5'- gGUGG-GGCGGCUUCGgggcaaagGCUCucAGCGa -3'
miRNA:   3'- gCACUgCCGUCGGAGCa-------CGAGu-UUGC- -5'
24686 3' -54.7 NC_005264.1 + 150990 0.67 0.919147
Target:  5'- aGUGGCGGCgacgGGCCgCGUGUcCGAuGCGc -3'
miRNA:   3'- gCACUGCCG----UCGGaGCACGaGUU-UGC- -5'
24686 3' -54.7 NC_005264.1 + 14460 0.67 0.919147
Target:  5'- -aUGGCGGCaAGCCUcucgCGUGCUuCGAAg- -3'
miRNA:   3'- gcACUGCCG-UCGGA----GCACGA-GUUUgc -5'
24686 3' -54.7 NC_005264.1 + 31963 0.67 0.919147
Target:  5'- aGUGGCGGCgacgGGCCgCGUGUcCGAuGCGc -3'
miRNA:   3'- gCACUGCCG----UCGGaGCACGaGUU-UGC- -5'
24686 3' -54.7 NC_005264.1 + 122110 0.67 0.913366
Target:  5'- -cUGGCGGCGGCCgaggacccGUUCGGGCGa -3'
miRNA:   3'- gcACUGCCGUCGGagca----CGAGUUUGC- -5'
24686 3' -54.7 NC_005264.1 + 3083 0.67 0.913366
Target:  5'- -cUGGCGGCGGCCgaggacccGUUCGGGCGa -3'
miRNA:   3'- gcACUGCCGUCGGagca----CGAGUUUGC- -5'
24686 3' -54.7 NC_005264.1 + 54223 0.68 0.907349
Target:  5'- aCG-GACGGCGGCCg-GUGCguUCAcGCu -3'
miRNA:   3'- -GCaCUGCCGUCGGagCACG--AGUuUGc -5'
24686 3' -54.7 NC_005264.1 + 15732 0.68 0.907349
Target:  5'- aCGcgGcACGGCGGCCUggcuugauuaugUGUGCgcgCGAGCGu -3'
miRNA:   3'- -GCa-C-UGCCGUCGGA------------GCACGa--GUUUGC- -5'
24686 3' -54.7 NC_005264.1 + 100085 0.68 0.907349
Target:  5'- gCGUaGcAUGGCGGCCgCGggGCUCAgcGACGa -3'
miRNA:   3'- -GCA-C-UGCCGUCGGaGCa-CGAGU--UUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.