miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24686 3' -54.7 NC_005264.1 + 116884 1.1 0.003619
Target:  5'- aCGUGACGGCAGCCUCGUGCUCAAACGa -3'
miRNA:   3'- -GCACUGCCGUCGGAGCACGAGUUUGC- -5'
24686 3' -54.7 NC_005264.1 + 149832 0.76 0.464866
Target:  5'- uCGUacuccuCGGUuuccGCCUCGUGCUCGAACGg -3'
miRNA:   3'- -GCAcu----GCCGu---CGGAGCACGAGUUUGC- -5'
24686 3' -54.7 NC_005264.1 + 30806 0.76 0.464866
Target:  5'- uCGUacuccuCGGUuuccGCCUCGUGCUCGAACGg -3'
miRNA:   3'- -GCAcu----GCCGu---CGGAGCACGAGUUUGC- -5'
24686 3' -54.7 NC_005264.1 + 47561 0.76 0.483684
Target:  5'- uGUGACGaaGGCCUCGUGC-CAGAUa -3'
miRNA:   3'- gCACUGCcgUCGGAGCACGaGUUUGc -5'
24686 3' -54.7 NC_005264.1 + 125109 0.76 0.483684
Target:  5'- gGUGGCGGguGCCuguuuagguucuUCGUGCUCuGGCu -3'
miRNA:   3'- gCACUGCCguCGG------------AGCACGAGuUUGc -5'
24686 3' -54.7 NC_005264.1 + 157940 0.73 0.633459
Target:  5'- --gGACGGCGGCCagCGUGgcCUCGAACu -3'
miRNA:   3'- gcaCUGCCGUCGGa-GCAC--GAGUUUGc -5'
24686 3' -54.7 NC_005264.1 + 138172 0.72 0.724568
Target:  5'- gGUGGCGGCuuccggccuGCCUCGcUGCagAGACa -3'
miRNA:   3'- gCACUGCCGu--------CGGAGC-ACGagUUUGc -5'
24686 3' -54.7 NC_005264.1 + 96488 0.7 0.800326
Target:  5'- uCGUGAUagaGGCgAGCgUCGUGCagCAGACa -3'
miRNA:   3'- -GCACUG---CCG-UCGgAGCACGa-GUUUGc -5'
24686 3' -54.7 NC_005264.1 + 155284 0.69 0.83484
Target:  5'- aCGUGGCGGaagcggguaGGCCguccUCGUGCgUAGGCGa -3'
miRNA:   3'- -GCACUGCCg--------UCGG----AGCACGaGUUUGC- -5'
24686 3' -54.7 NC_005264.1 + 36257 0.69 0.83484
Target:  5'- aCGUGGCGGaagcggguaGGCCguccUCGUGCgUAGGCGa -3'
miRNA:   3'- -GCACUGCCg--------UCGG----AGCACGaGUUUGC- -5'
24686 3' -54.7 NC_005264.1 + 82187 0.69 0.866408
Target:  5'- gGUcGGCGGCGGCCaUCGUa-UUAGACGg -3'
miRNA:   3'- gCA-CUGCCGUCGG-AGCAcgAGUUUGC- -5'
24686 3' -54.7 NC_005264.1 + 47150 0.68 0.873788
Target:  5'- gCGaUGAUGGCAGCuaugCUCGUGUU-GAACGc -3'
miRNA:   3'- -GC-ACUGCCGUCG----GAGCACGAgUUUGC- -5'
24686 3' -54.7 NC_005264.1 + 77297 0.68 0.901095
Target:  5'- gGUGcGCGGCAgauaguGUCUCGUucaacGCUCAGugGa -3'
miRNA:   3'- gCAC-UGCCGU------CGGAGCA-----CGAGUUugC- -5'
24686 3' -54.7 NC_005264.1 + 100085 0.68 0.907349
Target:  5'- gCGUaGcAUGGCGGCCgCGggGCUCAgcGACGa -3'
miRNA:   3'- -GCA-C-UGCCGUCGGaGCa-CGAGU--UUGC- -5'
24686 3' -54.7 NC_005264.1 + 129246 0.68 0.907349
Target:  5'- --cGGCGGCaAGCCUCGU-C-CGAACa -3'
miRNA:   3'- gcaCUGCCG-UCGGAGCAcGaGUUUGc -5'
24686 3' -54.7 NC_005264.1 + 54223 0.68 0.907349
Target:  5'- aCG-GACGGCGGCCg-GUGCguUCAcGCu -3'
miRNA:   3'- -GCaCUGCCGUCGGagCACG--AGUuUGc -5'
24686 3' -54.7 NC_005264.1 + 15732 0.68 0.907349
Target:  5'- aCGcgGcACGGCGGCCUggcuugauuaugUGUGCgcgCGAGCGu -3'
miRNA:   3'- -GCa-C-UGCCGUCGGA------------GCACGa--GUUUGC- -5'
24686 3' -54.7 NC_005264.1 + 3083 0.67 0.913366
Target:  5'- -cUGGCGGCGGCCgaggacccGUUCGGGCGa -3'
miRNA:   3'- gcACUGCCGUCGGagca----CGAGUUUGC- -5'
24686 3' -54.7 NC_005264.1 + 122110 0.67 0.913366
Target:  5'- -cUGGCGGCGGCCgaggacccGUUCGGGCGa -3'
miRNA:   3'- gcACUGCCGUCGGagca----CGAGUUUGC- -5'
24686 3' -54.7 NC_005264.1 + 31963 0.67 0.919147
Target:  5'- aGUGGCGGCgacgGGCCgCGUGUcCGAuGCGc -3'
miRNA:   3'- gCACUGCCG----UCGGaGCACGaGUU-UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.