Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24686 | 5' | -54.3 | NC_005264.1 | + | 33437 | 0.66 | 0.953571 |
Target: 5'- cCCGuCGUCGcccGGAC-AGCUGCUCGcGUg -3' miRNA: 3'- uGGC-GUAGC---UUUGaUCGACGAGC-CGa -5' |
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24686 | 5' | -54.3 | NC_005264.1 | + | 62982 | 0.66 | 0.953571 |
Target: 5'- cACCGCGgcuUUGGcgGACUccaaGGCgUGCUUGGCg -3' miRNA: 3'- -UGGCGU---AGCU--UUGA----UCG-ACGAGCCGa -5' |
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24686 | 5' | -54.3 | NC_005264.1 | + | 61444 | 0.66 | 0.953571 |
Target: 5'- cCCGCuccUCGgcGCcgAGUUGCUCGaGCg -3' miRNA: 3'- uGGCGu--AGCuuUGa-UCGACGAGC-CGa -5' |
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24686 | 5' | -54.3 | NC_005264.1 | + | 152464 | 0.66 | 0.953571 |
Target: 5'- cCCGuCGUCGcccGGAC-AGCUGCUCGcGUg -3' miRNA: 3'- uGGC-GUAGC---UUUGaUCGACGAGC-CGa -5' |
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24686 | 5' | -54.3 | NC_005264.1 | + | 149926 | 0.66 | 0.953571 |
Target: 5'- -aCGCGUCGggGgaGGaCUGCgaggccgggCGGCUc -3' miRNA: 3'- ugGCGUAGCuuUgaUC-GACGa--------GCCGA- -5' |
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24686 | 5' | -54.3 | NC_005264.1 | + | 30900 | 0.66 | 0.953571 |
Target: 5'- -aCGCGUCGggGgaGGaCUGCgaggccgggCGGCUc -3' miRNA: 3'- ugGCGUAGCuuUgaUC-GACGa--------GCCGA- -5' |
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24686 | 5' | -54.3 | NC_005264.1 | + | 145722 | 0.66 | 0.953571 |
Target: 5'- uACCGCA--GAAGCaUAGCUGCUgCuGCg -3' miRNA: 3'- -UGGCGUagCUUUG-AUCGACGA-GcCGa -5' |
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24686 | 5' | -54.3 | NC_005264.1 | + | 150697 | 0.66 | 0.949416 |
Target: 5'- -aCGCG-CGAGGCagGGCU-CUCGGCg -3' miRNA: 3'- ugGCGUaGCUUUGa-UCGAcGAGCCGa -5' |
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24686 | 5' | -54.3 | NC_005264.1 | + | 136335 | 0.66 | 0.949416 |
Target: 5'- cGCCGCGgcguaGAAGCUGGU---UCGGCg -3' miRNA: 3'- -UGGCGUag---CUUUGAUCGacgAGCCGa -5' |
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24686 | 5' | -54.3 | NC_005264.1 | + | 53783 | 0.66 | 0.949416 |
Target: 5'- uCUGCGUUgugGGAGCgggAGCUGCUCcGCg -3' miRNA: 3'- uGGCGUAG---CUUUGa--UCGACGAGcCGa -5' |
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24686 | 5' | -54.3 | NC_005264.1 | + | 75026 | 0.66 | 0.948122 |
Target: 5'- gGCCGUGUUGggGCUaucgauugucgcgaAGCccgGgUCGGCg -3' miRNA: 3'- -UGGCGUAGCuuUGA--------------UCGa--CgAGCCGa -5' |
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24686 | 5' | -54.3 | NC_005264.1 | + | 119485 | 0.66 | 0.94038 |
Target: 5'- uACUGCuugUGGAugUGGCUGCgcagGGCg -3' miRNA: 3'- -UGGCGua-GCUUugAUCGACGag--CCGa -5' |
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24686 | 5' | -54.3 | NC_005264.1 | + | 56820 | 0.66 | 0.94038 |
Target: 5'- cGCUGCGcggCGGcccuAGCUAGCgGCUCguGGCUg -3' miRNA: 3'- -UGGCGUa--GCU----UUGAUCGaCGAG--CCGA- -5' |
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24686 | 5' | -54.3 | NC_005264.1 | + | 30100 | 0.66 | 0.94038 |
Target: 5'- aAUCGCgaGUCGAGAUgcgGGCgGCgCGGCa -3' miRNA: 3'- -UGGCG--UAGCUUUGa--UCGaCGaGCCGa -5' |
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24686 | 5' | -54.3 | NC_005264.1 | + | 136801 | 0.66 | 0.94038 |
Target: 5'- gGCCGgG-CGGAcaaaGCUGGCggacGCUUGGCg -3' miRNA: 3'- -UGGCgUaGCUU----UGAUCGa---CGAGCCGa -5' |
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24686 | 5' | -54.3 | NC_005264.1 | + | 39101 | 0.66 | 0.94038 |
Target: 5'- aGCgGCGUCuGGACcAGCUGCUgucguggacgCGGCg -3' miRNA: 3'- -UGgCGUAGcUUUGaUCGACGA----------GCCGa -5' |
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24686 | 5' | -54.3 | NC_005264.1 | + | 158128 | 0.66 | 0.94038 |
Target: 5'- aGCgGCGUCuGGACcAGCUGCUgucguggacgCGGCg -3' miRNA: 3'- -UGgCGUAGcUUUGaUCGACGA----------GCCGa -5' |
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24686 | 5' | -54.3 | NC_005264.1 | + | 34315 | 0.67 | 0.930364 |
Target: 5'- cGCCGCGccUGAcGCUGGCUGaCUC-GCUg -3' miRNA: 3'- -UGGCGUa-GCUuUGAUCGAC-GAGcCGA- -5' |
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24686 | 5' | -54.3 | NC_005264.1 | + | 153342 | 0.67 | 0.930364 |
Target: 5'- cGCCGCGccUGAcGCUGGCUGaCUC-GCUg -3' miRNA: 3'- -UGGCGUa-GCUuUGAUCGAC-GAGcCGA- -5' |
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24686 | 5' | -54.3 | NC_005264.1 | + | 110533 | 0.67 | 0.928242 |
Target: 5'- aGCUGCAgaacuuuauaaggCGGAGCUAGCcGCUaGGCc -3' miRNA: 3'- -UGGCGUa------------GCUUUGAUCGaCGAgCCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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