miRNA display CGI


Results 1 - 20 of 48 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24686 5' -54.3 NC_005264.1 + 116919 1.07 0.005378
Target:  5'- cACCGCAUCGAAACUAGCUGCUCGGCUc -3'
miRNA:   3'- -UGGCGUAGCUUUGAUCGACGAGCCGA- -5'
24686 5' -54.3 NC_005264.1 + 109888 0.72 0.669571
Target:  5'- cGCCGCGUaGAGGC--GCUGCaUCGGCg -3'
miRNA:   3'- -UGGCGUAgCUUUGauCGACG-AGCCGa -5'
24686 5' -54.3 NC_005264.1 + 101932 0.72 0.710675
Target:  5'- -gCGCG-CGAAACUGGCgGCgUCGGCc -3'
miRNA:   3'- ugGCGUaGCUUUGAUCGaCG-AGCCGa -5'
24686 5' -54.3 NC_005264.1 + 78982 0.71 0.729849
Target:  5'- uGCCGCGcCGAAACUaaggAGUuaccugccgagguUGCUCGGCc -3'
miRNA:   3'- -UGGCGUaGCUUUGA----UCG-------------ACGAGCCGa -5'
24686 5' -54.3 NC_005264.1 + 162297 0.71 0.73085
Target:  5'- cGCCGUcucuucCGGAugGCUGGgUGCUCGGCg -3'
miRNA:   3'- -UGGCGua----GCUU--UGAUCgACGAGCCGa -5'
24686 5' -54.3 NC_005264.1 + 65545 0.71 0.760423
Target:  5'- cAUCGCGUC-AAAUUGGCUGCgcgaGGCa -3'
miRNA:   3'- -UGGCGUAGcUUUGAUCGACGag--CCGa -5'
24686 5' -54.3 NC_005264.1 + 53518 0.7 0.779567
Target:  5'- -aCGCAUCGGAgcgcuaACUAGC-GCcgCGGCUa -3'
miRNA:   3'- ugGCGUAGCUU------UGAUCGaCGa-GCCGA- -5'
24686 5' -54.3 NC_005264.1 + 4259 0.7 0.807232
Target:  5'- uGCCGCcgCGcAGCgAGuCUGUUCGGCc -3'
miRNA:   3'- -UGGCGuaGCuUUGaUC-GACGAGCCGa -5'
24686 5' -54.3 NC_005264.1 + 59863 0.7 0.807232
Target:  5'- gGCCGCcaCGGucauGCUAGCUGCUuaCGGUc -3'
miRNA:   3'- -UGGCGuaGCUu---UGAUCGACGA--GCCGa -5'
24686 5' -54.3 NC_005264.1 + 66471 0.69 0.816136
Target:  5'- cACCGCcgCGGccaGACUcaaugcuuggcgGGCUGCgCGGCg -3'
miRNA:   3'- -UGGCGuaGCU---UUGA------------UCGACGaGCCGa -5'
24686 5' -54.3 NC_005264.1 + 68768 0.69 0.816136
Target:  5'- aGCCgGCGUCGucuAACaauuGCUGCUCGGaCa -3'
miRNA:   3'- -UGG-CGUAGCu--UUGau--CGACGAGCC-Ga -5'
24686 5' -54.3 NC_005264.1 + 116560 0.69 0.824868
Target:  5'- gGCgGCGUCGAuGC--GCaGCUCGGCg -3'
miRNA:   3'- -UGgCGUAGCUuUGauCGaCGAGCCGa -5'
24686 5' -54.3 NC_005264.1 + 31669 0.69 0.833418
Target:  5'- aACUGCG-CGAGGCagGGCU-CUCGGCg -3'
miRNA:   3'- -UGGCGUaGCUUUGa-UCGAcGAGCCGa -5'
24686 5' -54.3 NC_005264.1 + 50262 0.69 0.841778
Target:  5'- uGCCGCGgcggCGAuuCcgAGUUGCUCGuGCg -3'
miRNA:   3'- -UGGCGUa---GCUuuGa-UCGACGAGC-CGa -5'
24686 5' -54.3 NC_005264.1 + 144618 0.69 0.857898
Target:  5'- cCCGCGUCacuAGCUAGCcGCUCGuGUc -3'
miRNA:   3'- uGGCGUAGcu-UUGAUCGaCGAGC-CGa -5'
24686 5' -54.3 NC_005264.1 + 49855 0.68 0.865644
Target:  5'- cGCCGCAgccuucuggCGGAGCU-GCUGaccgaUUGGCUa -3'
miRNA:   3'- -UGGCGUa--------GCUUUGAuCGACg----AGCCGA- -5'
24686 5' -54.3 NC_005264.1 + 99009 0.68 0.865644
Target:  5'- gACCGCGcCGAuACUagAGCUGgUCGaGCg -3'
miRNA:   3'- -UGGCGUaGCUuUGA--UCGACgAGC-CGa -5'
24686 5' -54.3 NC_005264.1 + 153825 0.68 0.880478
Target:  5'- -aCGCGUCGGGACUaacGGCgGCUCGcCUc -3'
miRNA:   3'- ugGCGUAGCUUUGA---UCGaCGAGCcGA- -5'
24686 5' -54.3 NC_005264.1 + 158243 0.68 0.890319
Target:  5'- cGCCGCcgCGgcGCUGGCggggagggccugcguUcccgGCUCGGCUu -3'
miRNA:   3'- -UGGCGuaGCuuUGAUCG---------------A----CGAGCCGA- -5'
24686 5' -54.3 NC_005264.1 + 39216 0.68 0.890319
Target:  5'- cGCCGCcgCGgcGCUGGCggggagggccugcguUcccgGCUCGGCUu -3'
miRNA:   3'- -UGGCGuaGCuuUGAUCG---------------A----CGAGCCGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.