Results 41 - 48 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24686 | 5' | -54.3 | NC_005264.1 | + | 150697 | 0.66 | 0.949416 |
Target: 5'- -aCGCG-CGAGGCagGGCU-CUCGGCg -3' miRNA: 3'- ugGCGUaGCUUUGa-UCGAcGAGCCGa -5' |
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24686 | 5' | -54.3 | NC_005264.1 | + | 149926 | 0.66 | 0.953571 |
Target: 5'- -aCGCGUCGggGgaGGaCUGCgaggccgggCGGCUc -3' miRNA: 3'- ugGCGUAGCuuUgaUC-GACGa--------GCCGA- -5' |
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24686 | 5' | -54.3 | NC_005264.1 | + | 61444 | 0.66 | 0.953571 |
Target: 5'- cCCGCuccUCGgcGCcgAGUUGCUCGaGCg -3' miRNA: 3'- uGGCGu--AGCuuUGa-UCGACGAGC-CGa -5' |
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24686 | 5' | -54.3 | NC_005264.1 | + | 62982 | 0.66 | 0.953571 |
Target: 5'- cACCGCGgcuUUGGcgGACUccaaGGCgUGCUUGGCg -3' miRNA: 3'- -UGGCGU---AGCU--UUGA----UCG-ACGAGCCGa -5' |
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24686 | 5' | -54.3 | NC_005264.1 | + | 30900 | 0.66 | 0.953571 |
Target: 5'- -aCGCGUCGggGgaGGaCUGCgaggccgggCGGCUc -3' miRNA: 3'- ugGCGUAGCuuUgaUC-GACGa--------GCCGA- -5' |
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24686 | 5' | -54.3 | NC_005264.1 | + | 145722 | 0.66 | 0.953571 |
Target: 5'- uACCGCA--GAAGCaUAGCUGCUgCuGCg -3' miRNA: 3'- -UGGCGUagCUUUG-AUCGACGA-GcCGa -5' |
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24686 | 5' | -54.3 | NC_005264.1 | + | 33437 | 0.66 | 0.953571 |
Target: 5'- cCCGuCGUCGcccGGAC-AGCUGCUCGcGUg -3' miRNA: 3'- uGGC-GUAGC---UUUGaUCGACGAGC-CGa -5' |
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24686 | 5' | -54.3 | NC_005264.1 | + | 152464 | 0.66 | 0.953571 |
Target: 5'- cCCGuCGUCGcccGGAC-AGCUGCUCGcGUg -3' miRNA: 3'- uGGC-GUAGC---UUUGaUCGACGAGC-CGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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