Results 41 - 48 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24686 | 5' | -54.3 | NC_005264.1 | + | 59863 | 0.7 | 0.807232 |
Target: 5'- gGCCGCcaCGGucauGCUAGCUGCUuaCGGUc -3' miRNA: 3'- -UGGCGuaGCUu---UGAUCGACGA--GCCGa -5' |
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24686 | 5' | -54.3 | NC_005264.1 | + | 53518 | 0.7 | 0.779567 |
Target: 5'- -aCGCAUCGGAgcgcuaACUAGC-GCcgCGGCUa -3' miRNA: 3'- ugGCGUAGCUU------UGAUCGaCGa-GCCGA- -5' |
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24686 | 5' | -54.3 | NC_005264.1 | + | 65545 | 0.71 | 0.760423 |
Target: 5'- cAUCGCGUC-AAAUUGGCUGCgcgaGGCa -3' miRNA: 3'- -UGGCGUAGcUUUGAUCGACGag--CCGa -5' |
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24686 | 5' | -54.3 | NC_005264.1 | + | 162297 | 0.71 | 0.73085 |
Target: 5'- cGCCGUcucuucCGGAugGCUGGgUGCUCGGCg -3' miRNA: 3'- -UGGCGua----GCUU--UGAUCgACGAGCCGa -5' |
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24686 | 5' | -54.3 | NC_005264.1 | + | 78982 | 0.71 | 0.729849 |
Target: 5'- uGCCGCGcCGAAACUaaggAGUuaccugccgagguUGCUCGGCc -3' miRNA: 3'- -UGGCGUaGCUUUGA----UCG-------------ACGAGCCGa -5' |
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24686 | 5' | -54.3 | NC_005264.1 | + | 101932 | 0.72 | 0.710675 |
Target: 5'- -gCGCG-CGAAACUGGCgGCgUCGGCc -3' miRNA: 3'- ugGCGUaGCUUUGAUCGaCG-AGCCGa -5' |
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24686 | 5' | -54.3 | NC_005264.1 | + | 109888 | 0.72 | 0.669571 |
Target: 5'- cGCCGCGUaGAGGC--GCUGCaUCGGCg -3' miRNA: 3'- -UGGCGUAgCUUUGauCGACG-AGCCGa -5' |
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24686 | 5' | -54.3 | NC_005264.1 | + | 116919 | 1.07 | 0.005378 |
Target: 5'- cACCGCAUCGAAACUAGCUGCUCGGCUc -3' miRNA: 3'- -UGGCGUAGCUUUGAUCGACGAGCCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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