miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24686 5' -54.3 NC_005264.1 + 4259 0.7 0.807232
Target:  5'- uGCCGCcgCGcAGCgAGuCUGUUCGGCc -3'
miRNA:   3'- -UGGCGuaGCuUUGaUC-GACGAGCCGa -5'
24686 5' -54.3 NC_005264.1 + 30100 0.66 0.94038
Target:  5'- aAUCGCgaGUCGAGAUgcgGGCgGCgCGGCa -3'
miRNA:   3'- -UGGCG--UAGCUUUGa--UCGaCGaGCCGa -5'
24686 5' -54.3 NC_005264.1 + 30900 0.66 0.953571
Target:  5'- -aCGCGUCGggGgaGGaCUGCgaggccgggCGGCUc -3'
miRNA:   3'- ugGCGUAGCuuUgaUC-GACGa--------GCCGA- -5'
24686 5' -54.3 NC_005264.1 + 31669 0.69 0.833418
Target:  5'- aACUGCG-CGAGGCagGGCU-CUCGGCg -3'
miRNA:   3'- -UGGCGUaGCUUUGa-UCGAcGAGCCGa -5'
24686 5' -54.3 NC_005264.1 + 33437 0.66 0.953571
Target:  5'- cCCGuCGUCGcccGGAC-AGCUGCUCGcGUg -3'
miRNA:   3'- uGGC-GUAGC---UUUGaUCGACGAGC-CGa -5'
24686 5' -54.3 NC_005264.1 + 34315 0.67 0.930364
Target:  5'- cGCCGCGccUGAcGCUGGCUGaCUC-GCUg -3'
miRNA:   3'- -UGGCGUa-GCUuUGAUCGAC-GAGcCGA- -5'
24686 5' -54.3 NC_005264.1 + 37391 0.68 0.894396
Target:  5'- cGCCGCcgCGAGaguguACguggAGgaGUUCGGCa -3'
miRNA:   3'- -UGGCGuaGCUU-----UGa---UCgaCGAGCCGa -5'
24686 5' -54.3 NC_005264.1 + 39101 0.66 0.94038
Target:  5'- aGCgGCGUCuGGACcAGCUGCUgucguggacgCGGCg -3'
miRNA:   3'- -UGgCGUAGcUUUGaUCGACGA----------GCCGa -5'
24686 5' -54.3 NC_005264.1 + 39216 0.68 0.890319
Target:  5'- cGCCGCcgCGgcGCUGGCggggagggccugcguUcccgGCUCGGCUu -3'
miRNA:   3'- -UGGCGuaGCuuUGAUCG---------------A----CGAGCCGA- -5'
24686 5' -54.3 NC_005264.1 + 40657 0.67 0.901001
Target:  5'- gGCUGCG-CGAGccuuacuacGCUGGCgccGUUCGGCg -3'
miRNA:   3'- -UGGCGUaGCUU---------UGAUCGa--CGAGCCGa -5'
24686 5' -54.3 NC_005264.1 + 46890 0.67 0.906111
Target:  5'- cGCCGCGUaccucCUAGCUGCgccgcguguucgCGGCUc -3'
miRNA:   3'- -UGGCGUAgcuuuGAUCGACGa-----------GCCGA- -5'
24686 5' -54.3 NC_005264.1 + 49855 0.68 0.865644
Target:  5'- cGCCGCAgccuucuggCGGAGCU-GCUGaccgaUUGGCUa -3'
miRNA:   3'- -UGGCGUa--------GCUUUGAuCGACg----AGCCGA- -5'
24686 5' -54.3 NC_005264.1 + 50262 0.69 0.841778
Target:  5'- uGCCGCGgcggCGAuuCcgAGUUGCUCGuGCg -3'
miRNA:   3'- -UGGCGUa---GCUuuGa-UCGACGAGC-CGa -5'
24686 5' -54.3 NC_005264.1 + 51508 0.67 0.901001
Target:  5'- -gCGCGUCGAcuagcGACUuugggucgGGCUGCUUGGg- -3'
miRNA:   3'- ugGCGUAGCU-----UUGA--------UCGACGAGCCga -5'
24686 5' -54.3 NC_005264.1 + 53518 0.7 0.779567
Target:  5'- -aCGCAUCGGAgcgcuaACUAGC-GCcgCGGCUa -3'
miRNA:   3'- ugGCGUAGCUU------UGAUCGaCGa-GCCGA- -5'
24686 5' -54.3 NC_005264.1 + 53783 0.66 0.949416
Target:  5'- uCUGCGUUgugGGAGCgggAGCUGCUCcGCg -3'
miRNA:   3'- uGGCGUAG---CUUUGa--UCGACGAGcCGa -5'
24686 5' -54.3 NC_005264.1 + 56820 0.66 0.94038
Target:  5'- cGCUGCGcggCGGcccuAGCUAGCgGCUCguGGCUg -3'
miRNA:   3'- -UGGCGUa--GCU----UUGAUCGaCGAG--CCGA- -5'
24686 5' -54.3 NC_005264.1 + 59863 0.7 0.807232
Target:  5'- gGCCGCcaCGGucauGCUAGCUGCUuaCGGUc -3'
miRNA:   3'- -UGGCGuaGCUu---UGAUCGACGA--GCCGa -5'
24686 5' -54.3 NC_005264.1 + 61444 0.66 0.953571
Target:  5'- cCCGCuccUCGgcGCcgAGUUGCUCGaGCg -3'
miRNA:   3'- uGGCGu--AGCuuUGa-UCGACGAGC-CGa -5'
24686 5' -54.3 NC_005264.1 + 62982 0.66 0.953571
Target:  5'- cACCGCGgcuUUGGcgGACUccaaGGCgUGCUUGGCg -3'
miRNA:   3'- -UGGCGU---AGCU--UUGA----UCG-ACGAGCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.