miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24686 5' -54.3 NC_005264.1 + 162297 0.71 0.73085
Target:  5'- cGCCGUcucuucCGGAugGCUGGgUGCUCGGCg -3'
miRNA:   3'- -UGGCGua----GCUU--UGAUCgACGAGCCGa -5'
24686 5' -54.3 NC_005264.1 + 158243 0.68 0.890319
Target:  5'- cGCCGCcgCGgcGCUGGCggggagggccugcguUcccgGCUCGGCUu -3'
miRNA:   3'- -UGGCGuaGCuuUGAUCG---------------A----CGAGCCGA- -5'
24686 5' -54.3 NC_005264.1 + 158128 0.66 0.94038
Target:  5'- aGCgGCGUCuGGACcAGCUGCUgucguggacgCGGCg -3'
miRNA:   3'- -UGgCGUAGcUUUGaUCGACGA----------GCCGa -5'
24686 5' -54.3 NC_005264.1 + 156418 0.68 0.894396
Target:  5'- cGCCGCcgCGAGaguguACguggAGgaGUUCGGCa -3'
miRNA:   3'- -UGGCGuaGCUU-----UGa---UCgaCGAGCCGa -5'
24686 5' -54.3 NC_005264.1 + 153825 0.68 0.880478
Target:  5'- -aCGCGUCGGGACUaacGGCgGCUCGcCUc -3'
miRNA:   3'- ugGCGUAGCUUUGA---UCGaCGAGCcGA- -5'
24686 5' -54.3 NC_005264.1 + 153342 0.67 0.930364
Target:  5'- cGCCGCGccUGAcGCUGGCUGaCUC-GCUg -3'
miRNA:   3'- -UGGCGUa-GCUuUGAUCGAC-GAGcCGA- -5'
24686 5' -54.3 NC_005264.1 + 152464 0.66 0.953571
Target:  5'- cCCGuCGUCGcccGGAC-AGCUGCUCGcGUg -3'
miRNA:   3'- uGGC-GUAGC---UUUGaUCGACGAGC-CGa -5'
24686 5' -54.3 NC_005264.1 + 150697 0.66 0.949416
Target:  5'- -aCGCG-CGAGGCagGGCU-CUCGGCg -3'
miRNA:   3'- ugGCGUaGCUUUGa-UCGAcGAGCCGa -5'
24686 5' -54.3 NC_005264.1 + 149926 0.66 0.953571
Target:  5'- -aCGCGUCGggGgaGGaCUGCgaggccgggCGGCUc -3'
miRNA:   3'- ugGCGUAGCuuUgaUC-GACGa--------GCCGA- -5'
24686 5' -54.3 NC_005264.1 + 145722 0.66 0.953571
Target:  5'- uACCGCA--GAAGCaUAGCUGCUgCuGCg -3'
miRNA:   3'- -UGGCGUagCUUUG-AUCGACGA-GcCGa -5'
24686 5' -54.3 NC_005264.1 + 144618 0.69 0.857898
Target:  5'- cCCGCGUCacuAGCUAGCcGCUCGuGUc -3'
miRNA:   3'- uGGCGUAGcu-UUGAUCGaCGAGC-CGa -5'
24686 5' -54.3 NC_005264.1 + 142721 0.67 0.907364
Target:  5'- cCCGCAUCGucGACUAcCUaaUCGGCUa -3'
miRNA:   3'- uGGCGUAGCu-UUGAUcGAcgAGCCGA- -5'
24686 5' -54.3 NC_005264.1 + 136801 0.66 0.94038
Target:  5'- gGCCGgG-CGGAcaaaGCUGGCggacGCUUGGCg -3'
miRNA:   3'- -UGGCgUaGCUU----UGAUCGa---CGAGCCGa -5'
24686 5' -54.3 NC_005264.1 + 136335 0.66 0.949416
Target:  5'- cGCCGCGgcguaGAAGCUGGU---UCGGCg -3'
miRNA:   3'- -UGGCGUag---CUUUGAUCGacgAGCCGa -5'
24686 5' -54.3 NC_005264.1 + 119485 0.66 0.94038
Target:  5'- uACUGCuugUGGAugUGGCUGCgcagGGCg -3'
miRNA:   3'- -UGGCGua-GCUUugAUCGACGag--CCGa -5'
24686 5' -54.3 NC_005264.1 + 116919 1.07 0.005378
Target:  5'- cACCGCAUCGAAACUAGCUGCUCGGCUc -3'
miRNA:   3'- -UGGCGUAGCUUUGAUCGACGAGCCGA- -5'
24686 5' -54.3 NC_005264.1 + 116560 0.69 0.824868
Target:  5'- gGCgGCGUCGAuGC--GCaGCUCGGCg -3'
miRNA:   3'- -UGgCGUAGCUuUGauCGaCGAGCCGa -5'
24686 5' -54.3 NC_005264.1 + 110533 0.67 0.928242
Target:  5'- aGCUGCAgaacuuuauaaggCGGAGCUAGCcGCUaGGCc -3'
miRNA:   3'- -UGGCGUa------------GCUUUGAUCGaCGAgCCGa -5'
24686 5' -54.3 NC_005264.1 + 109888 0.72 0.669571
Target:  5'- cGCCGCGUaGAGGC--GCUGCaUCGGCg -3'
miRNA:   3'- -UGGCGUAgCUUUGauCGACG-AGCCGa -5'
24686 5' -54.3 NC_005264.1 + 101932 0.72 0.710675
Target:  5'- -gCGCG-CGAAACUGGCgGCgUCGGCc -3'
miRNA:   3'- ugGCGUaGCUUUGAUCGaCG-AGCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.