Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24686 | 5' | -54.3 | NC_005264.1 | + | 101696 | 0.67 | 0.919358 |
Target: 5'- aACCGCAgCG-AGCgucAGCUGC-CGGUa -3' miRNA: 3'- -UGGCGUaGCuUUGa--UCGACGaGCCGa -5' |
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24686 | 5' | -54.3 | NC_005264.1 | + | 100028 | 0.67 | 0.907364 |
Target: 5'- gGCCGCggCGgcGCU-GCUGCgucCGGUg -3' miRNA: 3'- -UGGCGuaGCuuUGAuCGACGa--GCCGa -5' |
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24686 | 5' | -54.3 | NC_005264.1 | + | 99009 | 0.68 | 0.865644 |
Target: 5'- gACCGCGcCGAuACUagAGCUGgUCGaGCg -3' miRNA: 3'- -UGGCGUaGCUuUGA--UCGACgAGC-CGa -5' |
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24686 | 5' | -54.3 | NC_005264.1 | + | 78982 | 0.71 | 0.729849 |
Target: 5'- uGCCGCGcCGAAACUaaggAGUuaccugccgagguUGCUCGGCc -3' miRNA: 3'- -UGGCGUaGCUUUGA----UCG-------------ACGAGCCGa -5' |
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24686 | 5' | -54.3 | NC_005264.1 | + | 75026 | 0.66 | 0.948122 |
Target: 5'- gGCCGUGUUGggGCUaucgauugucgcgaAGCccgGgUCGGCg -3' miRNA: 3'- -UGGCGUAGCuuUGA--------------UCGa--CgAGCCGa -5' |
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24686 | 5' | -54.3 | NC_005264.1 | + | 68768 | 0.69 | 0.816136 |
Target: 5'- aGCCgGCGUCGucuAACaauuGCUGCUCGGaCa -3' miRNA: 3'- -UGG-CGUAGCu--UUGau--CGACGAGCC-Ga -5' |
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24686 | 5' | -54.3 | NC_005264.1 | + | 66471 | 0.69 | 0.816136 |
Target: 5'- cACCGCcgCGGccaGACUcaaugcuuggcgGGCUGCgCGGCg -3' miRNA: 3'- -UGGCGuaGCU---UUGA------------UCGACGaGCCGa -5' |
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24686 | 5' | -54.3 | NC_005264.1 | + | 65545 | 0.71 | 0.760423 |
Target: 5'- cAUCGCGUC-AAAUUGGCUGCgcgaGGCa -3' miRNA: 3'- -UGGCGUAGcUUUGAUCGACGag--CCGa -5' |
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24686 | 5' | -54.3 | NC_005264.1 | + | 62982 | 0.66 | 0.953571 |
Target: 5'- cACCGCGgcuUUGGcgGACUccaaGGCgUGCUUGGCg -3' miRNA: 3'- -UGGCGU---AGCU--UUGA----UCG-ACGAGCCGa -5' |
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24686 | 5' | -54.3 | NC_005264.1 | + | 61444 | 0.66 | 0.953571 |
Target: 5'- cCCGCuccUCGgcGCcgAGUUGCUCGaGCg -3' miRNA: 3'- uGGCGu--AGCuuUGa-UCGACGAGC-CGa -5' |
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24686 | 5' | -54.3 | NC_005264.1 | + | 59863 | 0.7 | 0.807232 |
Target: 5'- gGCCGCcaCGGucauGCUAGCUGCUuaCGGUc -3' miRNA: 3'- -UGGCGuaGCUu---UGAUCGACGA--GCCGa -5' |
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24686 | 5' | -54.3 | NC_005264.1 | + | 56820 | 0.66 | 0.94038 |
Target: 5'- cGCUGCGcggCGGcccuAGCUAGCgGCUCguGGCUg -3' miRNA: 3'- -UGGCGUa--GCU----UUGAUCGaCGAG--CCGA- -5' |
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24686 | 5' | -54.3 | NC_005264.1 | + | 53783 | 0.66 | 0.949416 |
Target: 5'- uCUGCGUUgugGGAGCgggAGCUGCUCcGCg -3' miRNA: 3'- uGGCGUAG---CUUUGa--UCGACGAGcCGa -5' |
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24686 | 5' | -54.3 | NC_005264.1 | + | 53518 | 0.7 | 0.779567 |
Target: 5'- -aCGCAUCGGAgcgcuaACUAGC-GCcgCGGCUa -3' miRNA: 3'- ugGCGUAGCUU------UGAUCGaCGa-GCCGA- -5' |
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24686 | 5' | -54.3 | NC_005264.1 | + | 51508 | 0.67 | 0.901001 |
Target: 5'- -gCGCGUCGAcuagcGACUuugggucgGGCUGCUUGGg- -3' miRNA: 3'- ugGCGUAGCU-----UUGA--------UCGACGAGCCga -5' |
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24686 | 5' | -54.3 | NC_005264.1 | + | 50262 | 0.69 | 0.841778 |
Target: 5'- uGCCGCGgcggCGAuuCcgAGUUGCUCGuGCg -3' miRNA: 3'- -UGGCGUa---GCUuuGa-UCGACGAGC-CGa -5' |
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24686 | 5' | -54.3 | NC_005264.1 | + | 49855 | 0.68 | 0.865644 |
Target: 5'- cGCCGCAgccuucuggCGGAGCU-GCUGaccgaUUGGCUa -3' miRNA: 3'- -UGGCGUa--------GCUUUGAuCGACg----AGCCGA- -5' |
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24686 | 5' | -54.3 | NC_005264.1 | + | 46890 | 0.67 | 0.906111 |
Target: 5'- cGCCGCGUaccucCUAGCUGCgccgcguguucgCGGCUc -3' miRNA: 3'- -UGGCGUAgcuuuGAUCGACGa-----------GCCGA- -5' |
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24686 | 5' | -54.3 | NC_005264.1 | + | 40657 | 0.67 | 0.901001 |
Target: 5'- gGCUGCG-CGAGccuuacuacGCUGGCgccGUUCGGCg -3' miRNA: 3'- -UGGCGUaGCUU---------UGAUCGa--CGAGCCGa -5' |
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24686 | 5' | -54.3 | NC_005264.1 | + | 39216 | 0.68 | 0.890319 |
Target: 5'- cGCCGCcgCGgcGCUGGCggggagggccugcguUcccgGCUCGGCUu -3' miRNA: 3'- -UGGCGuaGCuuUGAUCG---------------A----CGAGCCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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