Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24686 | 5' | -54.3 | NC_005264.1 | + | 39101 | 0.66 | 0.94038 |
Target: 5'- aGCgGCGUCuGGACcAGCUGCUgucguggacgCGGCg -3' miRNA: 3'- -UGgCGUAGcUUUGaUCGACGA----------GCCGa -5' |
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24686 | 5' | -54.3 | NC_005264.1 | + | 56820 | 0.66 | 0.94038 |
Target: 5'- cGCUGCGcggCGGcccuAGCUAGCgGCUCguGGCUg -3' miRNA: 3'- -UGGCGUa--GCU----UUGAUCGaCGAG--CCGA- -5' |
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24686 | 5' | -54.3 | NC_005264.1 | + | 119485 | 0.66 | 0.94038 |
Target: 5'- uACUGCuugUGGAugUGGCUGCgcagGGCg -3' miRNA: 3'- -UGGCGua-GCUUugAUCGACGag--CCGa -5' |
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24686 | 5' | -54.3 | NC_005264.1 | + | 34315 | 0.67 | 0.930364 |
Target: 5'- cGCCGCGccUGAcGCUGGCUGaCUC-GCUg -3' miRNA: 3'- -UGGCGUa-GCUuUGAUCGAC-GAGcCGA- -5' |
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24686 | 5' | -54.3 | NC_005264.1 | + | 110533 | 0.67 | 0.928242 |
Target: 5'- aGCUGCAgaacuuuauaaggCGGAGCUAGCcGCUaGGCc -3' miRNA: 3'- -UGGCGUa------------GCUUUGAUCGaCGAgCCGa -5' |
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24686 | 5' | -54.3 | NC_005264.1 | + | 100028 | 0.67 | 0.907364 |
Target: 5'- gGCCGCggCGgcGCU-GCUGCgucCGGUg -3' miRNA: 3'- -UGGCGuaGCuuUGAuCGACGa--GCCGa -5' |
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24686 | 5' | -54.3 | NC_005264.1 | + | 158243 | 0.68 | 0.890319 |
Target: 5'- cGCCGCcgCGgcGCUGGCggggagggccugcguUcccgGCUCGGCUu -3' miRNA: 3'- -UGGCGuaGCuuUGAUCG---------------A----CGAGCCGA- -5' |
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24686 | 5' | -54.3 | NC_005264.1 | + | 156418 | 0.68 | 0.894396 |
Target: 5'- cGCCGCcgCGAGaguguACguggAGgaGUUCGGCa -3' miRNA: 3'- -UGGCGuaGCUU-----UGa---UCgaCGAGCCGa -5' |
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24686 | 5' | -54.3 | NC_005264.1 | + | 40657 | 0.67 | 0.901001 |
Target: 5'- gGCUGCG-CGAGccuuacuacGCUGGCgccGUUCGGCg -3' miRNA: 3'- -UGGCGUaGCUU---------UGAUCGa--CGAGCCGa -5' |
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24686 | 5' | -54.3 | NC_005264.1 | + | 142721 | 0.67 | 0.907364 |
Target: 5'- cCCGCAUCGucGACUAcCUaaUCGGCUa -3' miRNA: 3'- uGGCGUAGCu-UUGAUcGAcgAGCCGA- -5' |
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24686 | 5' | -54.3 | NC_005264.1 | + | 101696 | 0.67 | 0.919358 |
Target: 5'- aACCGCAgCG-AGCgucAGCUGC-CGGUa -3' miRNA: 3'- -UGGCGUaGCuUUGa--UCGACGaGCCGa -5' |
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24686 | 5' | -54.3 | NC_005264.1 | + | 153342 | 0.67 | 0.930364 |
Target: 5'- cGCCGCGccUGAcGCUGGCUGaCUC-GCUg -3' miRNA: 3'- -UGGCGUa-GCUuUGAUCGAC-GAGcCGA- -5' |
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24686 | 5' | -54.3 | NC_005264.1 | + | 49855 | 0.68 | 0.865644 |
Target: 5'- cGCCGCAgccuucuggCGGAGCU-GCUGaccgaUUGGCUa -3' miRNA: 3'- -UGGCGUa--------GCUUUGAuCGACg----AGCCGA- -5' |
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24686 | 5' | -54.3 | NC_005264.1 | + | 116560 | 0.69 | 0.824868 |
Target: 5'- gGCgGCGUCGAuGC--GCaGCUCGGCg -3' miRNA: 3'- -UGgCGUAGCUuUGauCGaCGAGCCGa -5' |
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24686 | 5' | -54.3 | NC_005264.1 | + | 68768 | 0.69 | 0.816136 |
Target: 5'- aGCCgGCGUCGucuAACaauuGCUGCUCGGaCa -3' miRNA: 3'- -UGG-CGUAGCu--UUGau--CGACGAGCC-Ga -5' |
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24686 | 5' | -54.3 | NC_005264.1 | + | 59863 | 0.7 | 0.807232 |
Target: 5'- gGCCGCcaCGGucauGCUAGCUGCUuaCGGUc -3' miRNA: 3'- -UGGCGuaGCUu---UGAUCGACGA--GCCGa -5' |
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24686 | 5' | -54.3 | NC_005264.1 | + | 4259 | 0.7 | 0.807232 |
Target: 5'- uGCCGCcgCGcAGCgAGuCUGUUCGGCc -3' miRNA: 3'- -UGGCGuaGCuUUGaUC-GACGAGCCGa -5' |
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24686 | 5' | -54.3 | NC_005264.1 | + | 65545 | 0.71 | 0.760423 |
Target: 5'- cAUCGCGUC-AAAUUGGCUGCgcgaGGCa -3' miRNA: 3'- -UGGCGUAGcUUUGAUCGACGag--CCGa -5' |
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24686 | 5' | -54.3 | NC_005264.1 | + | 109888 | 0.72 | 0.669571 |
Target: 5'- cGCCGCGUaGAGGC--GCUGCaUCGGCg -3' miRNA: 3'- -UGGCGUAgCUUUGauCGACG-AGCCGa -5' |
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24686 | 5' | -54.3 | NC_005264.1 | + | 152464 | 0.66 | 0.953571 |
Target: 5'- cCCGuCGUCGcccGGAC-AGCUGCUCGcGUg -3' miRNA: 3'- uGGC-GUAGC---UUUGaUCGACGAGC-CGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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