miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24687 3' -57.4 NC_005264.1 + 121925 0.67 0.845883
Target:  5'- gGCGGGGAgggcgacgGCGAGAgCGaCGGagUCGc -3'
miRNA:   3'- aCGCCUCU--------UGCUCUgGC-GCCagAGCa -5'
24687 3' -57.4 NC_005264.1 + 2899 0.67 0.845883
Target:  5'- gGCGGGGAgggcgacgGCGAGAgCGaCGGagUCGc -3'
miRNA:   3'- aCGCCUCU--------UGCUCUgGC-GCCagAGCa -5'
24687 3' -57.4 NC_005264.1 + 20111 0.67 0.837941
Target:  5'- gGUGGGGAagauACGAGggaaaaaucuggGCCGCGG-CUCa- -3'
miRNA:   3'- aCGCCUCU----UGCUC------------UGGCGCCaGAGca -5'
24687 3' -57.4 NC_005264.1 + 47527 0.67 0.837941
Target:  5'- cGCGGAGAGuauCGAGGcauCCGCGGUa---- -3'
miRNA:   3'- aCGCCUCUU---GCUCU---GGCGCCAgagca -5'
24687 3' -57.4 NC_005264.1 + 155684 0.67 0.837941
Target:  5'- gUGCGG-GAugGAccuGGCCGCGaccacGUUUCGUc -3'
miRNA:   3'- -ACGCCuCUugCU---CUGGCGC-----CAGAGCA- -5'
24687 3' -57.4 NC_005264.1 + 4525 0.67 0.835523
Target:  5'- cGCGGAGGGgGAGGgguggucuucggcgUCGCGccaaGUCUCGg -3'
miRNA:   3'- aCGCCUCUUgCUCU--------------GGCGC----CAGAGCa -5'
24687 3' -57.4 NC_005264.1 + 123552 0.67 0.835523
Target:  5'- cGCGGAGGGgGAGGgguggucuucggcgUCGCGccaaGUCUCGg -3'
miRNA:   3'- aCGCCUCUUgCUCU--------------GGCGC----CAGAGCa -5'
24687 3' -57.4 NC_005264.1 + 94388 0.67 0.82982
Target:  5'- aGUGGAGGcccuccgcGCGcAGACCGCGG-CgCGg -3'
miRNA:   3'- aCGCCUCU--------UGC-UCUGGCGCCaGaGCa -5'
24687 3' -57.4 NC_005264.1 + 160924 0.67 0.82982
Target:  5'- uUGcCGGAGGAUGGGAucCCGCaGUCgCGg -3'
miRNA:   3'- -AC-GCCUCUUGCUCU--GGCGcCAGaGCa -5'
24687 3' -57.4 NC_005264.1 + 93070 0.67 0.821526
Target:  5'- cUGCGGGa---GGGGCCGCGGcgacCUCGg -3'
miRNA:   3'- -ACGCCUcuugCUCUGGCGCCa---GAGCa -5'
24687 3' -57.4 NC_005264.1 + 79722 0.67 0.821526
Target:  5'- gGCGGAGcuauACGAGguGCCGCaGUUUCu- -3'
miRNA:   3'- aCGCCUCu---UGCUC--UGGCGcCAGAGca -5'
24687 3' -57.4 NC_005264.1 + 103808 0.67 0.813068
Target:  5'- aGCGG----CGGGACCGCGGggcuugcgCUCGa -3'
miRNA:   3'- aCGCCucuuGCUCUGGCGCCa-------GAGCa -5'
24687 3' -57.4 NC_005264.1 + 76252 0.68 0.786779
Target:  5'- gUGUGGAGc-CGuGACUGCGGUCgccaCGg -3'
miRNA:   3'- -ACGCCUCuuGCuCUGGCGCCAGa---GCa -5'
24687 3' -57.4 NC_005264.1 + 6131 0.68 0.786779
Target:  5'- gUGCgGGAGGGCGAgGGCCGCGcGcC-CGUc -3'
miRNA:   3'- -ACG-CCUCUUGCU-CUGGCGC-CaGaGCA- -5'
24687 3' -57.4 NC_005264.1 + 125158 0.68 0.786779
Target:  5'- gUGCgGGAGGGCGAgGGCCGCGcGcC-CGUc -3'
miRNA:   3'- -ACG-CCUCUUGCU-CUGGCGC-CaGaGCA- -5'
24687 3' -57.4 NC_005264.1 + 62905 0.68 0.777739
Target:  5'- cGCGGuucagcuguAGAugacguuucucuAUGAGAgaaCCGCGGUCUCGc -3'
miRNA:   3'- aCGCC---------UCU------------UGCUCU---GGCGCCAGAGCa -5'
24687 3' -57.4 NC_005264.1 + 91564 0.68 0.777739
Target:  5'- gGCGGGGGgcACGAGGCuuguCGCGGagCUCa- -3'
miRNA:   3'- aCGCCUCU--UGCUCUG----GCGCCa-GAGca -5'
24687 3' -57.4 NC_005264.1 + 29488 0.68 0.777739
Target:  5'- cGUcGAGGA--GGGCCGCGGUCUCu- -3'
miRNA:   3'- aCGcCUCUUgcUCUGGCGCCAGAGca -5'
24687 3' -57.4 NC_005264.1 + 59516 0.68 0.768574
Target:  5'- uUGgGGGGcuCGAGACacgagacuccuaCGCGGUCUCu- -3'
miRNA:   3'- -ACgCCUCuuGCUCUG------------GCGCCAGAGca -5'
24687 3' -57.4 NC_005264.1 + 21293 0.68 0.759292
Target:  5'- aGCGGGGGACGcGGACCaugGCGGaCUUa- -3'
miRNA:   3'- aCGCCUCUUGC-UCUGG---CGCCaGAGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.