miRNA display CGI


Results 21 - 40 of 52 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24687 5' -58.5 NC_005264.1 + 13022 0.67 0.789955
Target:  5'- aUACGUGUcGCGgGAcccuacgGCCGCUCgUCUGc -3'
miRNA:   3'- cAUGCGCA-CGCgCUa------CGGCGAG-AGGC- -5'
24687 5' -58.5 NC_005264.1 + 5417 0.67 0.789955
Target:  5'- cGUACGCG-GCaucugucucgGCGucGCCGCUCUcgCCGg -3'
miRNA:   3'- -CAUGCGCaCG----------CGCuaCGGCGAGA--GGC- -5'
24687 5' -58.5 NC_005264.1 + 36975 0.67 0.789062
Target:  5'- uUGCGCGcugGCGCcAUagucgccGCCGC-CUCCGg -3'
miRNA:   3'- cAUGCGCa--CGCGcUA-------CGGCGaGAGGC- -5'
24687 5' -58.5 NC_005264.1 + 156002 0.67 0.789062
Target:  5'- uUGCGCGcugGCGCcAUagucgccGCCGC-CUCCGg -3'
miRNA:   3'- cAUGCGCa--CGCGcUA-------CGGCGaGAGGC- -5'
24687 5' -58.5 NC_005264.1 + 6231 0.67 0.780973
Target:  5'- --cCGCGgccGcCGCGAgacuUGCCGC-CUCCGu -3'
miRNA:   3'- cauGCGCa--C-GCGCU----ACGGCGaGAGGC- -5'
24687 5' -58.5 NC_005264.1 + 125258 0.67 0.780973
Target:  5'- --cCGCGgccGcCGCGAgacuUGCCGC-CUCCGu -3'
miRNA:   3'- cauGCGCa--C-GCGCU----ACGGCGaGAGGC- -5'
24687 5' -58.5 NC_005264.1 + 83230 0.67 0.771864
Target:  5'- uUGCGCGUGgGCGucuagGCCGC-CgCUGa -3'
miRNA:   3'- cAUGCGCACgCGCua---CGGCGaGaGGC- -5'
24687 5' -58.5 NC_005264.1 + 146633 0.67 0.762636
Target:  5'- -aGCGCG-GCGCGucccCCGUUgUCCGg -3'
miRNA:   3'- caUGCGCaCGCGCuac-GGCGAgAGGC- -5'
24687 5' -58.5 NC_005264.1 + 88172 0.67 0.752358
Target:  5'- uGUACGCgGUGCuGCGGUGCucaaagaaguugaCGUUCUUCu -3'
miRNA:   3'- -CAUGCG-CACG-CGCUACG-------------GCGAGAGGc -5'
24687 5' -58.5 NC_005264.1 + 156697 0.68 0.743856
Target:  5'- aUGCGCGacggGCGCGcgGCCcucGCcCUCCc -3'
miRNA:   3'- cAUGCGCa---CGCGCuaCGG---CGaGAGGc -5'
24687 5' -58.5 NC_005264.1 + 104568 0.68 0.743856
Target:  5'- gGUGCGCGcaaGCGCcAUGCCGCccacgggaUCgggCCGa -3'
miRNA:   3'- -CAUGCGCa--CGCGcUACGGCG--------AGa--GGC- -5'
24687 5' -58.5 NC_005264.1 + 37671 0.68 0.743856
Target:  5'- aUGCGCGacggGCGCGcgGCCcucGCcCUCCc -3'
miRNA:   3'- cAUGCGCa---CGCGCuaCGG---CGaGAGGc -5'
24687 5' -58.5 NC_005264.1 + 117513 0.68 0.734322
Target:  5'- -gGCGCG-GCGCGucugcgGUCGCUCcCCu -3'
miRNA:   3'- caUGCGCaCGCGCua----CGGCGAGaGGc -5'
24687 5' -58.5 NC_005264.1 + 129580 0.68 0.724703
Target:  5'- -gGCGCGgaucGCGCGuucGCCGCUgcUUCCu -3'
miRNA:   3'- caUGCGCa---CGCGCua-CGGCGA--GAGGc -5'
24687 5' -58.5 NC_005264.1 + 10553 0.68 0.724703
Target:  5'- -gGCGCGgaucGCGCGuucGCCGCUgcUUCCu -3'
miRNA:   3'- caUGCGCa---CGCGCua-CGGCGA--GAGGc -5'
24687 5' -58.5 NC_005264.1 + 31663 0.68 0.724703
Target:  5'- -gACGCGaacUGCGCGAgGCaggGCUCUCgGc -3'
miRNA:   3'- caUGCGC---ACGCGCUaCGg--CGAGAGgC- -5'
24687 5' -58.5 NC_005264.1 + 130267 0.68 0.715008
Target:  5'- -cGCGgGUGCGCGAcguUGCgGCggCUaCCGc -3'
miRNA:   3'- caUGCgCACGCGCU---ACGgCGa-GA-GGC- -5'
24687 5' -58.5 NC_005264.1 + 83729 0.68 0.705245
Target:  5'- gGUACGCG-GCGgcagaGAUGCC-CUCUgCGg -3'
miRNA:   3'- -CAUGCGCaCGCg----CUACGGcGAGAgGC- -5'
24687 5' -58.5 NC_005264.1 + 69670 0.68 0.705245
Target:  5'- -cACGCG-GCGCuGggGCCuugGUUCUCCGc -3'
miRNA:   3'- caUGCGCaCGCG-CuaCGG---CGAGAGGC- -5'
24687 5' -58.5 NC_005264.1 + 4769 0.68 0.694438
Target:  5'- uGUGCGCcuucUGCGCGgcGCCGUUCgcgcaccUCCa -3'
miRNA:   3'- -CAUGCGc---ACGCGCuaCGGCGAG-------AGGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.